PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000374900

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 251aa MW: 26948.1 Da PI: 10.4358

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000374900	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.1	7.4e-39	31	144	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....... 88 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tg+++ +as+ aess+s+++ +s + MDP0000374900 31 APKRSSTKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIVAATGSGTMPASALaaAAESSVSEQG-NSVSsglmsfg 125 789******************************************************************888844444444444.33334677777 PP TCP 89 ..................k 89 + MDP0000374900 126 hmgrsnaatgiwpfvsgiR 144 6666666666666665543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.1E-32	36	154	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.032	37	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MAENNKHPAQ IKDLQIMIAN KEKDESKKQL APKRSSTKDR HKKVDGRGRR IRMPALCAAR 60 VFQLTRELGH KSDGETIQWL LQQAEPSIVA ATGSGTMPAS ALAAAAESSV SEQGNSVSSG 120 LMSFGHMGRS NAATGIWPFV SGIRSSFDHN SGQQTLNFGG ENLNFMHKFG FQGFDAPGNL 180 GSVSFPTTLS GSNQQVPGLE LGLSQDGHIG LVNSQALSLT QFLQNKVQRP RGVGSFSQQQ 240 QQQQQSNTNE *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008389913.1	0.0	transcription factor TCP20-like
Swissprot	Q9LSD5	2e-67	TCP20_ARATH; Transcription factor TCP20
TrEMBL	M5XSE7	1e-112	M5XSE7_PRUPE; Uncharacterized protein
STRING	XP_008389913.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	9e-64	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000374900

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]