PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000380874
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 106aa    MW: 11603.2 Da    PI: 7.4675
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000380874genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.51.1e-2650105255
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegt...aaalkCaACgCHRnFHRr 55 
                    ++vrYkeClkNh a++G +a+DGCgEfmp+ geegt    ++l+C+AC+CH+nFHR+
  MDP0000380874  50 NGVRYKECLKNHVAAIGETAMDGCGEFMPN-GEEGTieaLKGLNCSACNCHKNFHRK 105
                    579**************************8.8887733355678************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1752105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.9E-2552105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.9E-2653105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.37854105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MDRDREANTR CTWFTQIGYV HGVEEFSLIV KGLHKYIGSS SPVVSTIGHN GVRYKECLKN  60
HVAAIGETAM DGCGEFMPNG EEGTIEALKG LNCSACNCHK NFHRK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.26571e-64bud| cell culture| fruit| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7944451e-61EU794445.1 Malus floribunda clone M18S-5Cs Vf apple scab resistance protein HcrVf2-like gene, complete sequence.
GenBankFN8232351e-61FN823235.1 Malus x domestica genomic sequence for BAC clone MC-20 containing a Mal d 1 gene cluster.
GenBankHF9687661e-61HF968766.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, non-columnar allele.
GenBankKF0554101e-61KF055410.1 Malus domestica cultivar GMAL 2473 clone BAC 32A4 Rvi15 scab resistance gene locus, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009355386.13e-27PREDICTED: zinc-finger homeodomain protein 3
SwissprotQ2QW445e-22ZHD3_ORYSJ; Zinc-finger homeodomain protein 3
TrEMBLA0A498JEN28e-28A0A498JEN2_MALDO; Uncharacterized protein
STRINGXP_008378952.12e-28(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-23homeobox protein 33