PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000382720
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 336aa    MW: 37810.1 Da    PI: 4.9577
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000382720genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.13.2e-14101533128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiy..kvePwdLpk........kvkaeek.ewyfFskrdkkyatgkrknratk..s 80 
                      frF+Ptd+el+ ++L+  + +++      + ++++++++++  ++eP+++ +        +++a ++  +yfFs+  k++++g++  r++    
  MDP0000382720  10 XFFRFKPTDQELIGRFLRYFLVETPrxlppPPHHTFMHKCNLFgnHSEPSEIWEafggggalQLAAADQpALYFFSELTKTTPKGSNIVRKMGrnG 105
                    569****************99999888887555567****98622679****74478888874444444488**************9999644348 PP

            NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    g W  +     v  +  +++ +glk+t+ + +  + +  +  W+++ey+l
  MDP0000382720 106 GKWDGKAVPXWVEGTdgTSTCIGLKRTFCYKN--EGSEDNGAWLLDEYSL 153
                    99*988888888776545566********984..3333578*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-178178IPR003441NAC domain
PROSITE profilePS5100521.8478178IPR003441NAC domain
PfamPF023651.5E-1110153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEINHSLVPX FFRFKPTDQE LIGRFLRYFL VETPRXLPPP PHHTFMHKCN LFGNHSEPSE  60
IWEAFGGGGA LQLAAADQPA LYFFSELTKT TPKGSNIVRK MGRNGGKWDG KAVPXWVEGT  120
DGTSTCIGLK RTFCYKNEGS EDNGAWLLDE YSLFAAPRNR KSHTSYDFDY ALCRLRKTSD  180
INKRKCPTSS SSEDDKVTAL KKNGINKRKC PTSSSSEDQV TTSNKRKKKM NANEEIESDD  240
DQELPQPADS GIAXVGAVEE NDWDPSLLEK YLLETHEEEP VNPSFYNEWI AADGGVQEAY  300
HPNAYENVLD QSFYGSSYLD TCFLEDQFVP PINMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206228KRKCPTSSSSEDQVTTSNKRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028944630.10.0protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A498KEC13e-79A0A498KEC1_MALDO; Uncharacterized protein
STRINGXP_009343318.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2762223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01520.14e-08NAC domain containing protein 67