PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000393956
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 174aa    MW: 20338.2 Da    PI: 8.2355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000393956genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.2e-1159164394
                    EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS...-EEEEEE..EEETTEEEE-TTHH.HHHHHHT--TT-EEEEE CS
             B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg...rsWevkliyrkksgryvltkGWk.eFvkangLkegDfvvFk 83 
                    k l  sd ++++rl +pk+ +++h           + +++e+ t+t+ d +     + ++k+  +++++ yvl +GW+ eF    gLke+D + ++
  MDP0000393956  59 KRLAASDLGELSRLLMPKEAVQKHvmsylddklakMVDSKEGLTVTVVDWDTcnrHELTFKH--WNSGDFYVLNGGWRpEFMVRRGLKENDEIGLY 152
                    77889*******************99998888887333446678888886657556666666..*************878**************** PP

                    E-SS.SEE..EE CS
             B3  84 ldgr.sefelvv 94 
                    ld++ ++ ++ +
  MDP0000393956 153 LDWDwKTSKCIF 164
                    **9988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-1654168IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-1155170No hitNo description
Gene3DG3DSA:2.40.330.102.7E-1258165IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-859165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MRTPLLRGQE EDHHPSKVRL FGVGLDNSLN DPRGGHEPST DLYLWDPTWD YNSIWKIRKR  60
LAASDLGELS RLLMPKEAVQ KHVMSYLDDK LAKMVDSKEG LTVTVVDWDT CNRHELTFKH  120
WNSGDFYVLN GGWRPEFMVR RGLKENDEIG LYLDWDWKTS KCIFRFSVLR RAK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371198.11e-109putative B3 domain-containing protein At1g78640
TrEMBLA0A498K0T11e-108A0A498K0T1_MALDO; Uncharacterized protein
STRINGXP_008371198.11e-109(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF5791221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.15e-18B3 family protein