PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000393985

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 197aa MW: 22040.9 Da PI: 7.8013

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000393985	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	74.7	2.6e-23	111	177	4	70
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 h +hTkv+g +RRv + a caa++F+L++eLG+ d++tieWL++ a+p+i++ t+ ++ s MDP0000393985 111 NPLEHQGRHTKVNGWGRRVLMLAMCAAQIFQLTQELGHRFDGETIEWLIRHAEPSIIASTDFGTLST 177 5567999***************************************************998754444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	17.346	115	169	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.7E-18	117	179	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MNEHDIQIPK IVTKKIQKEX DGXKSMQLTL LQDPXQRIRT EALLSSSPHT SLQSQIIDDP 60 PASAQTRRPK PDRDPHSHFD FFHHPNSSIX LAFPTIRPLT XGPAQAPKTG NPLEHQGRHT 120 KVNGWGRRVL MLAMCAAQIF QLTQELGHRF DGETIEWLIR HAEPSIIAST DFGTLSTEPI 180 STTTMFVSSQ MPFIPC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	8e-24	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000393985