PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000397984
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 390aa    MW: 41843.7 Da    PI: 9.1301
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000397984genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.72.9e-3985145262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  MDP0000397984  85 PEQALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 145
                    5799******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3669142IPR003851Zinc finger, Dof-type
PfamPF027011.4E-3287143IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.54489143IPR003851Zinc finger, Dof-type
PROSITE patternPS01361091127IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVFSSIPAYL DPANWQQQPN HHHHLTESNT NXISNNNINN NSHFLPPPPP PLPSNTHDGC  60
GVGGAGSIRP GSMADRARMA NIPLPEQALK CPRCESTNTK FCYFNNYSLT QPRHFCKTCR  120
RYWTRGGALR NVPVGGGCRR NKRSKGTSSS ASKSPASSSD RPTGSAGSSG HANLGLNNSS  180
TAGSADNNNM RMSPHIPPLR FMSPFSTDMA LNFGMMNNNN SSNYGVGDLN GFHQMGSGLG  240
ASGGSLFTFQ QQTPSFPFMA GLDPTPAGLM FESSGVEVPG YNQVRPRVPF AGMSISQMAS  300
VKMELESQQQ QQQNQELNLS RQLLGMNNNS GNDQFWSNGX GRGSGGSNAQ NQLQWKDFPA  360
XGWAIAHPCH KMSSPVDQHG GVPFLGVDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.302370.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008355670.30.0dof zinc finger protein DOF2.4-like
TrEMBLA0A498IGA80.0A0A498IGA8_MALDO; Uncharacterized protein
STRINGXP_009374687.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.12e-51DNA binding with one finger 2.4