PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000402536
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GeBP
Protein Properties Length: 402aa    MW: 44177.9 Da    PI: 4.4109
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000402536genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57397.71.1e-30167263298
         DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksql....veKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                    + qr wse+Dei++L+G+i+f++k+g+ +s+++  f ef+k+ ++++ s++ql    ++KirrLKkK++  ++    g++p+fsk+h+ k+fel+k
  MDP0000402536 167 KGQRFWSEDDEITILKGIIEFESKKGVAASSNVAPFLEFIKNDLQVDLSTDQLaeklTDKIRRLKKKYQAGED----GEDPVFSKPHELKCFELCK 258
                    569************************************************9722225689*******97655....5****************** PP

         DUF573  94 kiWgs 98 
                    kiWgs
  MDP0000402536 259 KIWGS 263
                    ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-26169262IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAPKKLVEDP PAAVMEESDD ETVDEEEEEG EEDDAVEVNK AKSVDLNDDD LEEEEEEEEE  60
EEEEEEEEKP SAVVTKSNPQ SGSASEDDSG SGSETESDNH SPSASDFTVK PIVSKPANSA  120
VMPSKKTASA KPTAAPSSGS KRPAETEPSL KNSKKKKVGG DDEDAKKGQR FWSEDDEITI  180
LKGIIEFESK KGVAASSNVA PFLEFIKNDL QVDLSTDQLA EKLTDKIRRL KKKYQAGEDG  240
EDPVFSKPHE LKCFELCKKI WGSEANGLDS NVKGGKRKPP RKNNKVNNDT VLALPVSDVS  300
VKKEVQNNVT NRGVKADPDD FWSKYPCLSG SLRTGNCAPR SDLTRLLTEK MPSLVGSSKA  360
KELEERWRAL QLIEMDLSVK KLDLMQEQTK LVLDSMKSLK D*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.88460.0bud| cell culture| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365444.10.0STOREKEEPER protein-like
TrEMBLA0A498J4090.0A0A498J409_MALDO; Uncharacterized protein
STRINGXP_008365444.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139661119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.15e-23DNA-binding storekeeper protein-related transcriptional regulator