PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000404409
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 397aa    MW: 44573.2 Da    PI: 8.935
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000404409genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.8e-54291571128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                    lppGfrFhPtdeel+ +yL kkv+ ++l++ +vi+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++  
  MDP0000404409  29 LPPGFRFHPTDEELILHYLVKKVACTPLPV-SVIAEVDIYKFDPWQLPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKTIVAPs 123
                    79****************************.99***************988899***************************************998 PP

            NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++++vg+kk Lvfykgr pkg kt+W+mheyrl
  MDP0000404409 124 gRRQNVGVKKALVFYKGRPPKGIKTNWIMHEYRL 157
                    78888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6425194IPR003441NAC domain
PROSITE profilePS5100561.29529194IPR003441NAC domain
PfamPF023657.6E-2730157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MKENXQNFXY RFPQTAPNVD AQNRXESSLP PGFRFHPTDE ELILHYLVKK VACTPLPVSV  60
IAEVDIYKFD PWQLPAKAAF GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKTIV  120
APSGRRQNVG VKKALVFYKG RPPKGIKTNW IMHEYRLPEN PNNHTTTNNH HRAMKLKDLS  180
MRLDDWVLCR IYKKSNVVTS AVALPSDQNQ EVQEEEDFLH DILSPSLKCP FTGLDHNIMS  240
TSNTSSLKPQ KSCSFSNLPD AMDYSLLTSI LADGQYSIPT GIGFQSTTPN KFSYSCTGST  300
XIGLDPQPLF NTDISSNSSS SHLLQTLPQY NGLNLPSSAP STENRLKRQH SITDDRGVLF  360
CPSKKYVNSN CSFTNTANSF LNQQLLLSSP SFHFQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-722819616167NO APICAL MERISTEM PROTEIN
1ut4_B5e-722819616167NO APICAL MERISTEM PROTEIN
1ut7_A5e-722819616167NO APICAL MERISTEM PROTEIN
1ut7_B5e-722819616167NO APICAL MERISTEM PROTEIN
3swm_A6e-722819619170NAC domain-containing protein 19
3swm_B6e-722819619170NAC domain-containing protein 19
3swm_C6e-722819619170NAC domain-containing protein 19
3swm_D6e-722819619170NAC domain-containing protein 19
3swp_A6e-722819619170NAC domain-containing protein 19
3swp_B6e-722819619170NAC domain-containing protein 19
3swp_C6e-722819619170NAC domain-containing protein 19
3swp_D6e-722819619170NAC domain-containing protein 19
4dul_A5e-722819616167NAC domain-containing protein 19
4dul_B5e-722819616167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.144060.0fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981150.0KF198115.1 Malus hupehensis NAC domain protein (NAC24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028946255.10.0NAC transcription factor 47-like
SwissprotQ84TD67e-98NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A498IKA60.0A0A498IKA6_MALDO; Uncharacterized protein
STRINGXP_009366417.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.17e-97NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]