PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000405669
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 732aa    MW: 80204.3 Da    PI: 6.6984
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000405669genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.6e-101965548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                     T+eEd +++  v + G+ +W++++++      +R++k+ck+rw ++l
    MDP0000405669 19 TAEEDAKILAHVSKXGPSNWTSVPKKTVftgVTRCGKSCKLRWTNHL 65
                     99******************************************996 PP
2Myb_DNA-binding46.86.8e-1573114346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T+ E+el+v++++  G++ W tIa++++ gRt++++k++w++
    MDP0000405669  73 SFTPHEEELIVRLHATXGSR-WPTIAQHLP-GRTDNDVKNYWNT 114
                      79******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.9371065IPR017930Myb domain
SMARTSM007177.6E-71467IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-161972IPR009057Homeodomain-like
SuperFamilySSF466891.05E-2319112IPR009057Homeodomain-like
PfamPF002491.1E-81965IPR001005SANT/Myb domain
CDDcd001679.23E-71965No hitNo description
PROSITE profilePS5129420.57566120IPR017930Myb domain
SMARTSM007175.6E-1470118IPR001005SANT/Myb domain
PfamPF002491.6E-1273114IPR001005SANT/Myb domain
CDDcd001671.49E-1073116No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2273120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MVXPACGDKL HVKXGTLLTA EEDAKILAHV SKXGPSNWTS VPKKTVFTGV TRCGKSCKLR  60
WTNHLKSNLK HESFTPHEEE LIVRLHATXG SRWPTIAQHL PGRTDNDVKN YWNTKLKKKL  120
SEMGIDHVTH KPFSQILADY GNIGGVQKVG MRIGISSLNK DLRNAMRMKP AEPYSLPAQG  180
FSNINSHLMP ITMIPTKAEP ILDSFLGHTQ PGSQPPDLLT QLEAIXLVTE AFKSTESQSS  240
APNFYSHEGT LXSSSSTSSA TQEQATLQAF SWXDFLLEDA XMPIGDAQEH EXKAEYSSNS  300
KDQAQVAIQQ SQIDMDYAIS XNEVEATSAA CDSSFVEAMV ARENXMFLDK EQRATEKLQK  360
NKKIPTKMVA ISLYRGNLHR VPDVPRRWLM PTPKISLKDF KSLLTRRSVA LSRLRSALPD  420
AASSNPDPDF VLDQLNEAPK AGNLSHPTIK FEAPENVDDD CAAGPSGEXK DGKQSDGADS  480
AVKSGGESDS PPALKPDLIE KESDVADVGA SSLAVKVDKL DEVENPNSER CNKEEEEEEL  540
SDNQKRKREV EEKLQVLNQK KHNLVQVLKQ ILNAEEELKR RNSMQGVVVR PXVSLQVDVT  600
NDSGSMTRHA AARXGSEANL EMEGVEXDEL SNHNIQSRHM FRMNSTSPSS ESPLRRPAHI  660
QHNVVPHPSR ASLGATGTSP SRFAPIGQLG HPANLPTLSV SGTNYMASSP SPAASGGTSA  720
FRDARLPSPW N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-221912031128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.102920.0bud| fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008393089.20.0stress response protein NST1-like
TrEMBLA0A498HZJ90.0A0A498HZJ9_MALDO; Uncharacterized protein
STRINGXP_008393089.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.15e-50MYB family protein