PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000409354
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 508aa    MW: 55271.9 Da    PI: 6.827
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000409354genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.21e-39149209262
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s 
  MDP0000409354 149 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 209
                    7899******************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-31146206IPR003851Zinc finger, Dof-type
PfamPF027014.0E-32151207IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.975153207IPR003851Zinc finger, Dof-type
PROSITE patternPS013610155191IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSEAAKDPAI NLFGKTISVL SSGSDSVRVT GAPEXDPSSG TVAEETVDQD RAASSSSNSS  60
PEVNAHRDRE EKEVNDNKDT LGEKPIQTKR ENGIPTLSSE ELTNPDAASR IGVNRESPIE  120
KENATLKTER TEEEQSETSN SQDKTLKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC  180
KNCQRYWTAG GTMRNVPVGA GRRKNKNSAS HYRHITVSEA VPNAQAXVLN GVHHPSVQPN  240
GTVLTFXRDT PLCESMASVL HMADKNIQNC TRNGFQKPEG LRTPASXGGG VIGDDHLTGS  300
TVTDSNSKDX ACKFGSQEQV MHNFQGFPPQ IPCFPGAPWP YPWXSPXXPP AFCPPGYPMS  360
FYPAAAYWXC AVQGAWNIPW LPPPLSSNNS ASSSGPNSPT LGKHSREENT VKQNSSEEEV  420
PPREKSAERN LWIPKTLRID DPGEAAKSSI WATLGIKHDK ADSVSSGGLF KAFQSKGDQK  480
NHLSDASQVL HANPAALSRS LNFQETS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161230.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vasculature of cotyledons and hypocotyls, leaves and roots. {ECO:0000269|PubMed:19619493}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008341584.20.0cyclic dof factor 2-like isoform X2
SwissprotQ93ZL51e-103CDF2_ARATH; Cyclic dof factor 2
TrEMBLA0A498HCY00.0A0A498HCY0_MALDO; Uncharacterized protein
STRINGXP_008341583.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62534147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-91cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]