PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000410728
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 424aa    MW: 47428.4 Da    PI: 9.6243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000410728genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.6e-08182229455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  MDP0000410728 182 SHSLAERVRREKISERMKMLQKLVPGC----DKVTGRAVMLDEIINYVQSLQ 229
                    8*************************9....55599***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-16176245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.90E-9176233No hitNo description
PROSITE profilePS5088815.04178228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-16180242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-5182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-10184234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MAAFSYNGSL DSIFLPNAPA TNDIIIYSNF SRSFYPSEPL TREIQADNNS RAVESSCTMD  60
HSSTHKVAFS DNENEPSVTK NKSRESSTVV DVDRLEIGEQ VTQKVTPMDK KRKSRIGSSF  120
NSAQSKGTKE HKGKKQKKAG GGTKKAEEKK IKSDKKDQVK VREEPPTGYI HVRARRGEAT  180
DSHSLAERVR REKISERMKM LQKLVPGCDK VTGRAVMLDE IINYVQSLQN QVEFLSLKLA  240
SLNPMFFDFG MDMGALVVKP ERLCSMESPY PSVQQCNPIQ STPFADTSTN ITATTAAAXT  300
AFTTNNNXHF LDNSASHLLQ RPNTFSQVHD KTYIVFRTVR ACCGMWKIKD KTFIIHVVSA  360
TATCVLXINY NAKKLPHKHT SIWLALISCL ILKNKLPVPS LEVVERGEPK KQLMDDSNFD  420
YCF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.264120.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392769.20.0transcription factor bHLH137-like
RefseqXP_008392771.20.0transcription factor bHLH137-like
TrEMBLA0A498I6N80.0A0A498I6N8_MALDO; Uncharacterized protein
STRINGXP_008392769.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-51bHLH family protein