PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000413041
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 111aa    MW: 12533.7 Da    PI: 6.5072
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000413041genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.77.4e-1010332347
                     -HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47
                     +W++Ia +++ gRt++++k++w+++
    MDP0000413041 10 RWSKIAGRLP-GRTDNEIKNHWNTH 33
                     4*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.718138IPR017930Myb domain
SuperFamilySSF466891.72E-9943IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-131051IPR009057Homeodomain-like
CDDcd001677.41E-71034No hitNo description
PfamPF002491.5E-71033IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MAFCLFWTYR WSKIAGRLPG RTDNEIKNHW NTHIKKKLLR MGIDPVTHEP LHKEEELPSN  60
IKENNSSSSS HDHDDHDNNF PADKSINGLH NSQENDQSVV NSSGSEGINS *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354562.12e-50PREDICTED: protein ODORANT1-like
RefseqXP_009354566.12e-50PREDICTED: protein ODORANT1-like
TrEMBLA0A498JTV43e-44A0A498JTV4_MALDO; Uncharacterized protein
TrEMBLA0A498K0J63e-43A0A498K0J6_MALDO; Uncharacterized protein
STRINGXP_009354562.19e-50(Pyrus x bretschneideri)
STRINGXP_009354566.19e-50(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1689547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.13e-24myb domain protein 85