PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000415733
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 325aa    MW: 35215.5 Da    PI: 9.3369
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000415733genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.94.2e-16105197186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +L+ea++e+ ++l+rg+l++ +Weev++ +        + +   ++ +qCk+k++nl+kryk + ++    +    s++ +f++le
  MDP0000415733 105 EWSDTAIGCLLEAYTEKFNQLNRGNLRGRDWEEVAEMLsercgtggANKSAYKTVEQCKNKIDNLKKRYKVELQRIXX-SGLGASHWHWFKKLE 197
                    5***********************************9999998888777788899***************98888776.4788889*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-19103197No hitNo description
Gene3DG3DSA:3.40.1160.109.1E-15245324IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.96E-9251316IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MASSDNFPMI DASSHLQAPT RPGDTIDSAA AANNGNFFPP PFPDDIDRSP NPTRNSNTKR  60
SSYYNKRFKS SSANPNPTTS TTEAESSSGP ETASQRGDYR KDREEWSDTA IGCLLEAYTE  120
KFNQLNRGNL RGRDWEEVAE MLSERCGTGG ANKSAYKTVE QCKNKIDNLK KRYKVELQRI  180
XXSGLGASHW HWFKKLEVIL GSXVAAKGGG GSDEERSVGR AGGNAAKQLK RYTPGSAAFG  240
NNLKAKSMPN LKWRRVMLKI SGAALAGDCQ SIDPKVAMQI AEEVARACHL GVEVAIVVGG  300
RNVFCGETWV SSTGLDRSTA YHIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A7e-13247324380Uridylate kinase
3ek5_B7e-13247324380Uridylate kinase
3ek5_C7e-13247324380Uridylate kinase
3ek5_D7e-13247324380Uridylate kinase
3ek5_E7e-13247324380Uridylate kinase
3ek5_F7e-13247324380Uridylate kinase
3ek6_A7e-13247324380Uridylate kinase
3ek6_B7e-13247324380Uridylate kinase
3ek6_C7e-13247324380Uridylate kinase
3ek6_D7e-13247324380Uridylate kinase
3ek6_E7e-13247324380Uridylate kinase
3ek6_F7e-13247324380Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345431.20.0uncharacterized protein LOC103408349 isoform X2
TrEMBLA0A498KGM90.0A0A498KGM9_MALDO; Uncharacterized protein
STRINGXP_008345426.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.26e-86Trihelix family protein