PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000419045

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 830aa MW: 88736.2 Da PI: 6.2057

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000419045	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	408.9	4.7e-125	457	816	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lLl+cAeavs+++ +a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp s+ + + +++ ++a+++f+ +sP++kfsh+t MDP0000419045 457 LTLLLQCAEAVSADNYDEATKMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPHSSVPITYTQKMVSAFQVFNGISPFVKFSHFT 552 579***************************************************************9999******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 aNqaI ea+e e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g s e+ e+tg+rL++fA++lg+pfef + va+++ +l++e+ MDP0000419045 553 ANQAIQEAFEXEDRVHIVDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEAXEATGKRLSDFADKLGLPFEFFP-VAEKVGNLDPER 643 ************************************************....***********************.7******* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 L+++++Ea+aV++ h+l+d ++s ++ +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a++++eseer++vE++l MDP0000419045 644 LNISKREAVAVHWLQ--HSLYDITGSDSN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGASYSEESEERHVVEQQL 732 *********99..999988888888....******************.899********************************* PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 l+rei+nv+a g +r + + +++Wre+++++GF ++l +aa+qa lll +++sdgy++ e++g+l lgWkd L+++SaWr MDP0000419045 733 LSREIRNVLAVGGPSRSGEVK-FHNWREKFQQSGFXGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDLCLLTASAWR 816 ***********888776.************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.43	430	796	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-122	457	816	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 830 aa Download sequence Send to blast
MAACALLGDN VGDHISGNGS NNNNXSSHGG GGGSPSCPMN NSTTNSNSSS VEQQPTKMVR 60 KRMASEIEVQ TTPTSRTAGS DYFRLSRRGV INXSPPXQPV YPNPNQNPNP SKVNSSMFYP 120 NYSTMLLPVP SSTNLTALTS AGGALLSPAS PSPSPSPSPS SAAAAGSWGP IDPLSFHRPL 180 SIQPTTTSTQ ITTTPAVCGF SGLPLFPPEK TPPSNPTTAA TTISAMEDGS SAATAWIDGI 240 IKDLIHSSTN VSIPQLIHNV REIIFPCNPS LAALLEYRLR SISEPPPPLP LPVPSFNPTP 300 IPDMRRRQQG GPGPGALKXN LDSGALHDVA IFNTSTADNN DLYLQSWSGG GGGGGGXGLS 360 LPQPNPTPVP MTCNQTNPHH QSPSFNQTIH QTQDKQXENS SSSSPAAEST TPTAAPAPTT 420 ATATAPPQPT TSAVSLLREK KEEMRQQKRD EEGLHLLTLL LQCAEAVSAD NYDEATKMLL 480 EISELSTPFG TSAQRVAAYF SEAMSARLVS SCLGIYASLP HSSVPITYTQ KMVSAFQVFN 540 GISPFVKFSH FTANQAIQEA FEXEDRVHIV DLDIMQGLQW PGLFHILASR PGGPPYVRLT 600 GLGTSMEAXE ATGKRLSDFA DKLGLPFEFF PVAEKVGNLD PERLNISKRE AVAVHWLQHS 660 LYDITGSDSN TLWLLQRLAP KVVTVVEQDL SHAGSFLGRF VEAIHYYSAL FDSLGASYSE 720 ESEERHVVEQ QLLSREIRNV LAVGGPSRSG EVKFHNWREK FQQSGFXGIS LAGNAATQAT 780 LLLGMFPSDG YTLVEDNGTL KLGWKDLCLL TASAWRPPFH AAANPNLHY*

Sequence ? help Back to Top

Protein Sequence Length: 830 aa Download sequence Send to blast

MAACALLGDN VGDHISGNGS NNNNXSSHGG GGGSPSCPMN NSTTNSNSSS VEQQPTKMVR  60
KRMASEIEVQ TTPTSRTAGS DYFRLSRRGV INXSPPXQPV YPNPNQNPNP SKVNSSMFYP  120
NYSTMLLPVP SSTNLTALTS AGGALLSPAS PSPSPSPSPS SAAAAGSWGP IDPLSFHRPL  180
SIQPTTTSTQ ITTTPAVCGF SGLPLFPPEK TPPSNPTTAA TTISAMEDGS SAATAWIDGI  240
IKDLIHSSTN VSIPQLIHNV REIIFPCNPS LAALLEYRLR SISEPPPPLP LPVPSFNPTP  300
IPDMRRRQQG GPGPGALKXN LDSGALHDVA IFNTSTADNN DLYLQSWSGG GGGGGGXGLS  360
LPQPNPTPVP MTCNQTNPHH QSPSFNQTIH QTQDKQXENS SSSSPAAEST TPTAAPAPTT  420
ATATAPPQPT TSAVSLLREK KEEMRQQKRD EEGLHLLTLL LQCAEAVSAD NYDEATKMLL  480
EISELSTPFG TSAQRVAAYF SEAMSARLVS SCLGIYASLP HSSVPITYTQ KMVSAFQVFN  540
GISPFVKFSH FTANQAIQEA FEXEDRVHIV DLDIMQGLQW PGLFHILASR PGGPPYVRLT  600
GLGTSMEAXE ATGKRLSDFA DKLGLPFEFF PVAEKVGNLD PERLNISKRE AVAVHWLQHS  660
LYDITGSDSN TLWLLQRLAP KVVTVVEQDL SHAGSFLGRF VEAIHYYSAL FDSLGASYSE  720
ESEERHVVEQ QLLSREIRNV LAVGGPSRSG EVKFHNWREK FQQSGFXGIS LAGNAATQAT  780
LLLGMFPSDG YTLVEDNGTL KLGWKDLCLL TASAWRPPFH AAANPNLHY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	440	817	3	380	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.26311	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008370319.2	0.0	protein SCARECROW-like
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A498K6X3	0.0	A0A498K6X3_MALDO; Uncharacterized protein
STRING	XP_008370319.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2068	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein

Link Out ? help Back to Top
Phytozome	MDP0000419045