PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000420968

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 160aa MW: 17177.7 Da PI: 7.958

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000420968	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	43.6	1.1e-13	4	85	37	103
TCP 37 deLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg....................kaaksaakskksqks 103 d+LG+d++sk+++WL+++ak+ai+el +++s ++++ +a+ +++n+s++ s s+++ MDP0000420968 4 DRLGYDRPSKAVDWLIKKAKAAIDELEELPSWNPHSIstTAAXPAMETQNPSATxihcfaavdaigsanrrtmvG-------SGVSEQQ 85 89***************************4444433323222223333323332444666666666544433331.......2222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.147	1	29	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.6E-9	4	48	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MRRDRLGYDR PSKAVDWLIK KAKAAIDELE ELPSWNPHSI STTAAXPAME TQNPSATXIH 60 CFAAVDAIGS ANRRTMVGSG VSEQQFAQNP NSNSTFLPPS LDSDAIAXTI KSFFPMGASA 120 VAAAAESPSS TIQFRQNYPP DLLSKAKLPC PPLTFCCRH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.30343	0.0	bud\| leaf\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB531022	0.0	AB531022.1 Malus x domestica MdTCP4B mRNA, complete cds.
GenBank	KM501066	0.0	KM501066.1 Malus domestica TCP domain-containing protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009335205.1	2e-85	PREDICTED: transcription factor TCP4-like
TrEMBL	D9ZJD0	5e-84	D9ZJD0_MALDO; TCP domain class transcription factor
STRING	XP_009335205.1	8e-85	(Pyrus x bretschneideri)
STRING	XP_008382081.1	7e-85	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.3	5e-28	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000420968