PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000429067
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family LBD
Protein Properties Length: 229aa    MW: 24836.1 Da    PI: 8.068
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000429067genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.31.5e-39181181100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC k+C++apyf aeq +++fa+vhk+FGasn +kll ++p+++r da+ +l yeA ar+rdPvyG+v++i++lqqq+ +l+aela
  MDP0000429067  18 PCGACKFLRRKCIKGCIFAPYFDAEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLSYEALARVRDPVYGCVSHIFTLQQQVVNLQAELA 113
                    7***********************9989******************************************************************** PP

         DUF260  96 llkee 100
                    +++++
  MDP0000429067 114 YVQAR 118
                    *9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.54617119IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-3718116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSESSSNGNN NNGGGGGPCG ACKFLRRKCI KGCIFAPYFD AEQGTAHFAA VHKVFGASNA  60
SKLLLRIPPH KRLDAVVTLS YEALARVRDP VYGCVSHIFT LQQQVVNLQA ELAYVQARLG  120
TLQRFPLPPQ SPQLEIPPPT RSLQYSSSNI NVTSSSSSDM VPTSNILMHC DPLQAPNTSS  180
EMSSLFNSED QELIIDGENL QALAREFVCR YLPGVRLNKS SGSHHQNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-39141127104LOB family transfactor Ramosa2.1
5ly0_B2e-39141127104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345767.11e-169LOB domain-containing protein 19
SwissprotO813221e-69LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A498KKD91e-168A0A498KKD9_MALDO; Uncharacterized protein
STRINGXP_008345767.11e-169(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.13e-63LOB domain-containing protein 19