PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000435722

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 284aa MW: 31500.3 Da PI: 6.7912

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000435722	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.9	4.9e-10	195	238	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ + K++ +++LekA+ Y+k Lq MDP0000435722 195 IAAKNRRERISERLKILQELVPNgC------KVDLVTMLEKAISYVKFLQ 238 5679*****************77......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	6.3E-12	187	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-13	187	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.691	188	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.26E-11	190	242	No hit	No description
SMART	SM00353	3.2E-11	194	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-7	196	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MALAKDIRMP TPHDSCTHDS LQVSDLSNGF VFRAXSSYQP DQLINFKSGY YNSGESLLSF 60 DKNKQNSQSI YLNSSASKDN CDSDLHHGSY SQWNQTTGIG DHSLLGDLNW FQTASNYSSS 120 IHSISKEDHG DHEAYGWXYS EATDYFQQSD EQEAGFHKRP ITGESMQPSK KQCTSATKKP 180 KPKSSTSASK DPQSIAAKNR RERISERLKI LQELVPNGCK VDLVTMLEKA ISYVKFLQLQ 240 VKVLATDEFW PVQGGKAPDI SQVKEAIDAI LSSSQRDTSS SSK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008364556.3	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	6e-64	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A498HAW1	0.0	A0A498HAW1_MALDO; Uncharacterized protein
STRING	XP_008364556.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4937	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	2e-53	ROOT HAIR DEFECTIVE6

Link Out ? help Back to Top
Phytozome	MDP0000435722

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]