PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000439540
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 450aa    MW: 48033.5 Da    PI: 8.0134
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000439540genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.91.2e-15272317555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  MDP0000439540 272 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 317
                    9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.27E-18265328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17272324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-17272321No hitNo description
PfamPF000103.0E-13272317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-18273322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MSQRVPSWDL DKTTTTPPAP RLSSRSHSLH TAPTDVPLLD YEVAELTWEN GEVAMHGLGP  60
PRLLAKPLST TKYTTWDKPR ASGTLESIVN QATSTALPPP LKPPFDSSSG GGSGAKELVT  120
WFDRHRAVAT PSTTVTMDAL VPCRNQSDDP SSQMIESISV PGVISGTGMV GCSTRVDSCS  180
GATGAATHDD DTLLSGKGTS LARVPETPEW SSRSQSVSGS ATFGIDSQHV TLDSTKASDY  240
DSGEVGDGDD RKKRSTGKSS ISTKRSRAAA IHNQSERKRR DKINQRMKTL QKLVPNSSKT  300
DKASMLDEVI EYLKQLQAQV QMISRMNMPT IMLPMAMQQL QMSMMAAAPR NMGMGMGMGM  360
GMGMDMNNIG RPSIPGIPPI LHPSAFMPMA ASWDGTGGDR LPAASTGVMP DPMSAFLACQ  420
SQPMTMDAYS MMAAMYQQFH QPPASSSKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280ERKRRD
2276281RKRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.158980.0bud| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894231e-113KP689423.1 Prunus pseudocerasus isolate Unigene11342 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375803.10.0transcription factor UNE10 isoform X1
SwissprotQ8GZ389e-93UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A498JF350.0A0A498JF35_MALDO; Uncharacterized protein
STRINGXP_008375803.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]