PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000440829
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 369aa    MW: 42456.7 Da    PI: 4.5663
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000440829genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.52.6e-36171433128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                    +G+rFhPt ee+v +yLk k ++k ++  ++i+e+d+++++PwdL +++ +++  wyfFs+++ ky +++r+nr+t  g W+ tgk+++v+++ ++
  MDP0000440829  17 VGVRFHPTPEEMV-DYLKLKKQDKGFKS-DHIAEFDVCNFDPWDLAARIPSDDMVWYFFSRKEYKYINSTRSNRTTPGGQWRITGKERPVKARrSK 110
                    7************.9***********99.89**************99999999**************************************98566 PP

            NAM  98 elvglkktLvfykg..rapkgektdWvmheyrl 128
                    +l+g k+tL+fy+    + k +kt+Wv hey+l
  MDP0000440829 111 ALIGKKRTLTFYQRcxXQXKLKKTNWVRHEYSL 143
                    67**********7544788889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100539.54615167IPR003441NAC domain
SuperFamilySSF1019411.7E-3716166IPR003441NAC domain
PfamPF023653.6E-1817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGTLGSNREX GGVSDAVGVR FHPTPEEMVD YLKLKKQDKG FKSDHIAEFD VCNFDPWDLA  60
ARIPSDDMVW YFFSRKEYKY INSTRSNRTT PGGQWRITGK ERPVKARRSK ALIGKKRTLT  120
FYQRCXXQXK LKKTNWVRHE YSLIDSEAIS NPKLRQKDFV LNRMKKEFDX EDTSIGEVEL  180
GSYSVSNVED HAAAVVTPES QDXSSSTFLS SGYIEPGDVL QXNXTSYDCN AMQSPFGDNH  240
YYSYTDKNDI STCDKGDWFT MSDFENEPPD DMCQEPRVGD FYSHVAYKNN ISTNDENETV  300
SYAXYDFENQ YADDMIQEVC LPREEDLELA FYLPQLEDYT LEPPMNKKVG NVLHDNNYIA  360
CNEFQSPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-221816720165NO APICAL MERISTEM PROTEIN
1ut4_B6e-221816720165NO APICAL MERISTEM PROTEIN
1ut7_A6e-221816720165NO APICAL MERISTEM PROTEIN
1ut7_B6e-221816720165NO APICAL MERISTEM PROTEIN
3swm_A9e-221816723168NAC domain-containing protein 19
3swm_B9e-221816723168NAC domain-containing protein 19
3swm_C9e-221816723168NAC domain-containing protein 19
3swm_D9e-221816723168NAC domain-containing protein 19
3swp_A9e-221816723168NAC domain-containing protein 19
3swp_B9e-221816723168NAC domain-containing protein 19
3swp_C9e-221816723168NAC domain-containing protein 19
3swp_D9e-221816723168NAC domain-containing protein 19
4dul_A6e-221816720165NAC domain-containing protein 19
4dul_B6e-221816720165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028955807.10.0NAC domain-containing protein 71-like isoform X2
TrEMBLA0A498KR720.0A0A498KR72_MALDO; Uncharacterized protein
STRINGXP_008360312.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14450518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-29NAC domain containing protein 52