PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000443362
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 570aa    MW: 65661 Da    PI: 6.3398
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000443362genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.71.8e-29113198187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+l+L+e+r+ ++++++++++k+plW+evs+ m +e+gf+r+ k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  MDP0000443362 113 RWPRQETLTLLEIRSALDSKFKETNQKGPLWDEVSRIMaEEHGFQRTGKKCKEKFENLYKYYKKTKEGKTGR--QDGKHYRFFRQLEA 198
                    8*************************************999*****************************98..55667*******85 PP
2trihelix64.72e-20413499185
       trihelix   1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                    rWt+qev  Li++++++e+++++++  ++++ Wee++++m   g++rs  +Ckekwen +  +k ++e++k ++++++++  yf+q+
  MDP0000443362 413 RWTEQEVTSLIQLKTSLEQTFKESEylKEEGVWEEIAANMGXLGYTRSGGECKEKWENESVCFKMTTESNKMHKQDTKTNNMYFSQI 499
                    8*********************9977799********************************************99999999999997 PP
3Myb_DNA-binding223.7e-07413470346
                      SS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT...TTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...........tWktIartmg...kgRtlkqcksrwqk 46 
                      rWT++E   l+++ + l               W+ Ia+ mg    +R++ +ck++w +
    MDP0000443362 413 RWTEQEVTSLIQLKTSLEQTfkeseylkeegVWEEIAANMGxlgYTRSGGECKEKWEN 470
                      9*****************99************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.783106171IPR017877Myb-like domain
SMARTSM007170.35110173IPR001005SANT/Myb domain
CDDcd122033.99E-21112178No hitNo description
PfamPF138371.8E-20112199No hitNo description
SMARTSM007170.0069410474IPR001005SANT/Myb domain
CDDcd122036.47E-17412479No hitNo description
PfamPF138375.2E-13413487No hitNo description
Gene3DG3DSA:1.10.10.602.5E-5413470IPR009057Homeodomain-like
PROSITE profilePS500907.654413472IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDDYEPPDLR QLMASRTQFH TPLQFPEQFS VHLNLTPPPP PXPHYXHLPI MXSSDVVPAA  60
GLLDNHRYTS MITTTACHPT TSSAASAAAA LYGIEFEHGW NNIDGANTNN NSRWPRQETL  120
TLLEIRSALD SKFKETNQKG PLWDEVSRIM AEEHGFQRTG KKCKEKFENL YKYYKKTKEG  180
KTGRQDGKHY RFFRQLEAIY GNHHQSTNQS SFYSRSNPLL CHTTPSDSIN RDQNQEVVVQ  240
DQKLISYESL SFSNNSTEFD QTSPSKNKDD DDSLSAIDYF PMNQSTGSLK NEKKSYATSV  300
KKKWKAKVVD FMNSQMGKVI KTQEALMEKM VKSIEASADE RIAKEEEWRK QETAKYERDV  360
HEFWAKERAW VETRDAMIME ALRKYTGEGT YNNSGKDDIA KEIGSDHSKN YPRWTEQEVT  420
SLIQLKTSLE QTFKESEYLK EEGVWEEIAA NMGXLGYTRS GGECKEKWEN ESVCFKMTTE  480
SNKMHKQDTK TNNMYFSQIS CYEEGHEVRN RRQDGMGLQL MDEGLSPSCS NMDVNSSSLH  540
IPFNGGENLW DERDSYVTNS LRNKRLLHW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345531.20.0trihelix transcription factor PTL-like
TrEMBLA0A498KH810.0A0A498KH81_MALDO; Uncharacterized protein
STRINGXP_008345531.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-77Trihelix family protein