PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000445859
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WOX
Protein Properties Length: 418aa    MW: 47451.2 Da    PI: 6.9791
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000445859genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.25.1e-22126185357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  MDP0000445859 126 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 185
                    7*****************99**************************************97 PP
2Wus_type_Homeobox115.42.8e-37125187365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
      MDP0000445859 125 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 187
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.6E-5123190IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-9126185IPR009057Homeodomain-like
SuperFamilySSF466894.28E-12126191IPR009057Homeodomain-like
PfamPF000461.0E-19126185IPR001356Homeobox domain
CDDcd000861.38E-6127187No hitNo description
PROSITE profilePS5007111.224131186IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAFLLFHFPY TYTFDVDFDL ISTWVWVSSD VDQMGLLQSN PIIAQSFRKG CRAVAYILKK  60
NTATDEGREA ACISFSPWQQ KWTPEKFNGR KMPNEIDTVI LVTCQAMAEQ NKRSEFLNTP  120
QVVVSSRWNP TPEQLRALEE LYRRGTRTPS AEQIQHITAQ LRKYGKIEGK NVFYWFQNHK  180
ARERQKRRRQ MESSALSADH DQPLQISMTS ADNQKKEESL GASMTGFEVE ETKNWAPFTN  240
CSTTTLAEES VSIQRAAKAR MAAADCRADG WIQFDEEELQ QRRNFVERNA TWQMMQLSCP  300
SHPHPPTHLI NTPPTCASTT TRSRAAATGR TMDQRLIKSH DLSICIAPHA SETGFNIEQD  360
HGCEESQTLQ LFPLRSGHAN ASANTNELSI SDKDHAELSA SFSAHPYSFF EFLPLKN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.154830.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008360925.10.0WUSCHEL-related homeobox 1-like
TrEMBLA0A498I4V80.0A0A498I4V8_MALDO; Uncharacterized protein
STRINGXP_008360925.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.19e-47WUSCHEL related homeobox 1