PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000446238

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 124aa MW: 13390.7 Da PI: 7.507

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000446238	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.1	3.9e-11	10	51	56	97
DUF260 56 damsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +++s++yeA+ r+ +P yG+vg++++++++ +q++++++l MDP0000446238 10 SIFKSVLYEACGRIVNPTYGSVGLMWSGSWDQCQAAVDAVLE 51 689********************************9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	2.0E-6	10	47	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MGHAFITSSS IFKSVLYEAC GRIVNPTYGS VGLMWSGSWD QCQAAVDAVL EGPPITGIDA 60 DALQQNTNPN LDPPHISGDI RYVSTDTNSG XSSRNKARTL EQVEKVHKPA QSPTRFCNRV 120 KHQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009356758.1	3e-49	PREDICTED: LOB domain-containing protein 42-like
Swissprot	Q9CA30	6e-25	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A498I8Q7	2e-78	A0A498I8Q7_MALDO; Uncharacterized protein
STRING	XP_008360156.1	1e-79	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68510.1	2e-27	LOB domain-containing protein 42

Link Out ? help Back to Top
Phytozome	MDP0000446238