PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000447570
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 254aa    MW: 28651.3 Da    PI: 5.0508
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000447570genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18107156355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+GVr+++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ +l+g
  MDP0000447570 107 YRGVRRRP-WGKYAAEIRDSTRNG--IRVWLGTFDSPEAAALAYDQAAFALRG 156
                    9*******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.83E-22106165IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-29106165IPR001471AP2/ERF domain
PROSITE profilePS5103223.011106164IPR001471AP2/ERF domain
SMARTSM003801.9E-37106170IPR001471AP2/ERF domain
PfamPF008477.7E-13107156IPR001471AP2/ERF domain
CDDcd000186.83E-21107166No hitNo description
PRINTSPR003671.5E-12107118IPR001471AP2/ERF domain
PRINTSPR003671.5E-12146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEMESAFFQF SSPSDFSSDS SFGSLDXFSW DDESLLLPFN XHELMNFSAS NINDSXDMLL  60
YDVVARGAKQ TFVAQNEANS FNRVKEEEVT SANNQPLEEK STKEKAYRGV RRRPWGKYAA  120
EIRDSTRNGI RVWLGTFDSP EAAALAYDQA AFALRGSLAV LNFPAQVVQE SLQEIKYKHD  180
EACSPVIALK RRHSMKRKSM HKKCNKPVSQ STDQRKVNEV LPQNVMVLED LGVEYLEELL  240
DISSCGSNNW CPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-26103167266ATERF1
3gcc_A1e-26103167266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958444.10.0ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y93e-64ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A498JWX10.0A0A498JWX1_MALDO; Uncharacterized protein
STRINGXP_009354935.11e-145(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-57ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]