PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000449108
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 168aa    MW: 18988.7 Da    PI: 10.127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000449108genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000237294123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C k F ++  L  H++ H
  MDP0000449108 72 FECQYCFKEFXNSQALGGHQNAH 94
                   89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-56798IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.28E-66899No hitNo description
PROSITE profilePS5015711.4067299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MVSPTSRTAH EITLWHDRLG HPERTAMRRG SSTEGGGDES VNSSNSVSHP IKLEGSRENE  60
KSSTSEPDDK KFECQYCFKE FXNSQALGGH QNAHKKERMK KKRLQLQARK TNIKSYLQPF  120
QTXPSSWFYS STVVVYDPSS YLNSDHPFTL MKSPRSVSSR SIKIMGH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.169820.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008353004.15e-56zinc finger protein 5
TrEMBLA0A498HKA11e-54A0A498HKA1_MALDO; Uncharacterized protein
STRINGXP_008353004.12e-55(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.14e-15zinc finger protein 5