PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000449389

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 418aa MW: 46051 Da PI: 9.5173

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000449389	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84	9.4e-27	82	132	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvt skRrng+lKKA+E SvLCdaevaviifs++++lye+ss MDP0000449389 82 KRIENATSRQVTXSKRRNGLLKKAYEXSVLCDAEVAVIIFSQKDRLYEFSS 132 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.885	74	134	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-35	74	133	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-27	76	96	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.63E-33	76	133	No hit	No description
SuperFamily	SSF55455	2.09E-25	76	141	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-22	83	130	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-27	96	111	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.3E-27	111	132	IPR002100	Transcription factor, MADS-box
Pfam	PF00141	1.7E-59	156	382	IPR002016	Haem peroxidase, plant/fungal/bacterial
PROSITE profile	PS50873	56.511	175	417	IPR002016	Haem peroxidase, plant/fungal/bacterial
Gene3D	G3DSA:1.10.520.10	1.1E-17	175	270	No hit	No description
CDD	cd00693	1.15E-134	175	416	No hit	No description
SuperFamily	SSF48113	2.06E-77	178	417	IPR010255	Haem peroxidase
PRINTS	PR00461	1.6E-32	193	206	IPR000823	Plant peroxidase
PRINTS	PR00461	1.6E-32	212	222	IPR000823	Plant peroxidase
PRINTS	PR00458	1.7E-21	213	230	IPR002016	Haem peroxidase, plant/fungal/bacterial
PRINTS	PR00458	1.7E-21	231	243	IPR002016	Haem peroxidase, plant/fungal/bacterial
PRINTS	PR00461	1.6E-32	231	246	IPR000823	Plant peroxidase
Gene3D	G3DSA:1.10.420.10	7.3E-47	271	397	No hit	No description
PRINTS	PR00461	1.6E-32	277	289	IPR000823	Plant peroxidase
PRINTS	PR00458	1.7E-21	278	293	IPR002016	Haem peroxidase, plant/fungal/bacterial
PROSITE pattern	PS00435	0	278	288	IPR019793	Peroxidases heam-ligand binding site
PRINTS	PR00461	1.6E-32	336	351	IPR000823	Plant peroxidase
PRINTS	PR00458	1.7E-21	338	353	IPR002016	Haem peroxidase, plant/fungal/bacterial
PRINTS	PR00461	1.6E-32	352	369	IPR000823	Plant peroxidase
PRINTS	PR00461	1.6E-32	392	405	IPR000823	Plant peroxidase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0004601	Molecular Function	peroxidase activity
GO:0020037	Molecular Function	heme binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MTTVCRHRTM RWPVSIGSSA RSLGRRTRGI IEGALDQYGR KMVVWPENKE KKEIGHNQIK 60 NSFFAFPALQ SQDMVRGKIX MKRIENATSR QVTXSKRRNG LLKKAYEXSV LCDAEVAVII 120 FSQKDRLYEF SSSEXVEQIA SNLVASGGLV GVCNDAFHQG SKGLRNWINX MPXGDSTAGN 180 QAEKDDPPNI SVRSFYVIDD AKVKLEAACP HTVSCADIVG IAARDVVIMS GGPFWNXLKG 240 RKDGRVSRAN ETINLPAPTF NXSQLIQSFA KRGLGXKDLV ALSGGHTLGF SHCSSFESRL 300 RNFSSVHDVD PTMNKEFAQK LRTKCSKPNR DITAGELLDS TSSTFDNNYY KQLVAGKGVF 360 GSDQALFSDY RTGWIVESFA KDQSVFFKEF AASMVNLGNV GVIEDGGEVR LNCHVVN*

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MTTVCRHRTM RWPVSIGSSA RSLGRRTRGI IEGALDQYGR KMVVWPENKE KKEIGHNQIK  60
NSFFAFPALQ SQDMVRGKIX MKRIENATSR QVTXSKRRNG LLKKAYEXSV LCDAEVAVII  120
FSQKDRLYEF SSSEXVEQIA SNLVASGGLV GVCNDAFHQG SKGLRNWINX MPXGDSTAGN  180
QAEKDDPPNI SVRSFYVIDD AKVKLEAACP HTVSCADIVG IAARDVVIMS GGPFWNXLKG  240
RKDGRVSRAN ETINLPAPTF NXSQLIQSFA KRGLGXKDLV ALSGGHTLGF SHCSSFESRL  300
RNFSSVHDVD PTMNKEFAQK LRTKCSKPNR DITAGELLDS TSSTFDNNYY KQLVAGKGVF  360
GSDQALFSDY RTGWIVESFA KDQSVFFKEF AASMVNLGNV GVIEDGGEVR LNCHVVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1qgj_A	7e-59	179	417	57	299	PEROXIDASE N
1qgj_B	7e-59	179	417	57	299	PEROXIDASE N
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Functional Description ? help Back to Top
Source	Description
UniProt	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP164011	6e-85	KP164011.1 Pyrus pyrifolia clone PpSOC1-2 SOC1-like MADS-box protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008376941.2	1e-173	peroxidase 66-like
Swissprot	Q9LT91	1e-123	PER66_ARATH; Peroxidase 66
TrEMBL	A0A498KLV0	1e-170	A0A498KLV0_MALDO; Peroxidase
STRING	XP_008343715.1	1e-176	(Malus domestica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.4	1e-27	AGAMOUS-like 42

Link Out ? help Back to Top
Phytozome	MDP0000449389

Publications ? help Back to Top
Tognolli M,Penel C,Greppin H,Simon P Analysis and expression of the class III peroxidase large gene family in Arabidopsis thaliana. Gene, 2002. 288(1-2): p. 129-38 [PMID:12034502] Welinder KG, et al. Structural diversity and transcription of class III peroxidases from Arabidopsis thaliana. Eur. J. Biochem., 2002. 269(24): p. 6063-81 [PMID:12473102] Valério L,De Meyer M,Penel C,Dunand C Expression analysis of the Arabidopsis peroxidase multigenic family. Phytochemistry, 2004. 65(10): p. 1331-42 [PMID:15231406] Sato Y, et al. Isolation and characterization of a novel peroxidase gene ZPO-C whose expression and function are closely associated with lignification during tracheary element differentiation. Plant Cell Physiol., 2006. 47(4): p. 493-503 [PMID:16446311] Tokunaga N,Kaneta T,Sato S,Sato Y Analysis of expression profiles of three peroxidase genes associated with lignification in Arabidopsis thaliana. Physiol Plant, 2009. 136(2): p. 237-49 [PMID:19453502]