PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000451038
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 1222aa    MW: 134992 Da    PI: 7.0575
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000451038genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.13.2e-30548632187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                    rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s  +++f+++ea
  MDP0000451038 548 RWPRQETLALLKIRSDMDATFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSEMEA 632
                    8*********************************************************************866665..*******85 PP
2trihelix104.57.7e-339461031187
       trihelix    1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87  
                     rW+k evlaLi++r+ +e r++++  k+plWee+s+ m + g++r +k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  MDP0000451038  946 RWPKAEVLALIKLRSGLEPRYQESGPKGPLWEEISAGMGRMGYKRRAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 1031
                     8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046463.4E-94214436IPR006740Protein of unknown function DUF604
SMARTSM007170.033545607IPR001005SANT/Myb domain
PROSITE profilePS500906.423547605IPR017877Myb-like domain
PfamPF138372.5E-21547633No hitNo description
CDDcd122036.57E-28547612No hitNo description
PROSITE profilePS500906.7719391003IPR017877Myb-like domain
SMARTSM007170.00369431005IPR001005SANT/Myb domain
CDDcd122032.69E-309451010No hitNo description
PfamPF138375.7E-229451032No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 1222 aa     Download sequence    Send to blast
MTTTPTTNPN NANPRPPKNR RYRRSHVATA VIAVAALLIS TTAWLSLVFS ATPHSLPAPQ  60
SFTRSQSRTV SRHSGHSEEL TLNDIVFGIA GSAQLWKQRK EYVRLWWRQD DMRGHVWLEE  120
KLPENDVDRS LPPIMVSEDI SRFRYTNPTG HPSGLRISRI VSECFRLGLP NVRWFVLADD  180
DTIINADNLV AVLGKYDSSE MVYVGSPSES HSANTYFSHS MAFGGGGIAI SHPLAEALSE  240
MQDQCLERYP KLYGSDDRLH ACITELGIPL TREPGFHQCD IRGNAHGLLS SHPIAPFVSI  300
HHVEAVDPFY PGSTSLQSLK LFTQAMRLQP TSFLQRSICY DHRHGLTFSV SLGYVVQVFP  360
NIVLPRDLER SEQTYSAWNG ISQRNEFDFD TKDPYRSVCK KPILFFLKDV RKQGNATLGS  420
YMRSKAKDEF KRKKSMIATM IYIRLEQHHE SLRAPNLLHN QPAAGGAGGV GGGSQTHYGG  480
GGEMSAAEAA ASAEQGQLVV EAASPISSRP PASAAVNMDE LMTLSGAAVA DEDALADRGG  540
GGGSSGNRWP RQETLALLKI RSDMDATFRD ATLKGPLWED VSRKLAELGY KRNAKKCKEK  600
FENVHKYYKR TKEGRAGRQD GKSYKFFSEM EALHGTAAAT TAHVSASPGV HAAHASPNPV  660
SVGFGSVSNP MPISSFRMSP TIPVIPSQQQ QQATAIPIIP SSQPTATPMD VNFSSNSSST  720
SPGTDDEDDD DDMEGEPSSR KRKRGSASTS TGTSGGGSTR KMMAFFEVLM KQVMQKQESM  780
QQRFLEVIEK REQDRTIREE AWKRQEMARL TREHELMSQE RAISASRDAA IIAFLQKITG  840
QTIQLPPALN VHVAPPPPVS PSVSVVAPLP QTTPPPQPQP TTQTYQTPQQ QQPQPPQQVQ  900
HVRHIQQTQN VQPVMAVPEQ QVPPPTPQEN IASGGGGSSE PASSSRWPKA EVLALIKLRS  960
GLEPRYQESG PKGPLWEEIS AGMGRMGYKR RAKRCKEKWE NINKYFKKVK ESNKKRPEDA  1020
KTCPYFHELD ALYRKRVLGG WSSGGSSGSL GNKLEQQPQQ QENPKSGSST HPQPSAHTVP  1080
QTQGQVVAAG SENKDTDHST SVETNLRANL FAEGKEEAAK KPEDIVKELM EVHDHHQQVF  1140
QQGQPQHLVV DDYNRMEEAD SDNLMDQEEE DMEDDDIDED DDEETEQERK MAYKIEFQKQ  1200
NTGRSSNGGG NGAPSFLAMV Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1422433RSKAKDEFKRKK
2590598KRNAKKCKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.230330.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375438.10.0trihelix transcription factor GTL1 isoform X1
TrEMBLA0A498JJ110.0A0A498JJ11_MALDO; Uncharacterized protein
STRINGXP_008375438.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-45Trihelix family protein