PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000451107
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 744aa    MW: 83299.9 Da    PI: 6.0259
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000451107genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.93.2e-29141224186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++keg+ ++++++  t+++fdql+
  MDP0000451107 141 RWPRQETLALLQIRSDMDVAFRDASVKGPLWEEVSSKLAALGYHRSAKKCKEKFENVYKYHRRTKEGRTGKSEGK--TYRFFDQLN 224
                    8********************************************************************975544..6******97 PP
2trihelix100.41.5e-31534618186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+k ev+aLi++r++++++++++  k+plWee+s  mr+ g++r++k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ l+
  MDP0000451107 534 RWPKVEVQALIKLRTSLDSKYQENGPKGPLWEEISGGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHLLD 618
                    8********************************************************************97.99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.5E-4138200IPR001005SANT/Myb domain
PROSITE profilePS500906.76140198IPR017877Myb-like domain
PfamPF138371.0E-18140226No hitNo description
CDDcd122031.30E-23140205No hitNo description
SMARTSM007170.0041531593IPR001005SANT/Myb domain
PROSITE profilePS500906.98533591IPR017877Myb-like domain
PfamPF138372.7E-21533620No hitNo description
CDDcd122035.77E-29533598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MLREXFWNVL DVGKLGFGKL QRWPDYRNFS SKFPLLLGPL KGETYLEDER SQARLGGYDP  60
STYQGVIREE KGSRPAGPML GESTSVLGSS IGRDAVATAV AAPEGGGGSG NGSNNNSGEE  120
TFRGGQEELL GGGERSFGGN RWPRQETLAL LQIRSDMDVA FRDASVKGPL WEEVSSKLAA  180
LGYHRSAKKC KEKFENVYKY HRRTKEGRTG KSEGKTYRFF DQLNALENQP PTPGSTTTHH  240
QPKPHQSTTA AAAATMTTMA MANPPPTISH PNSSTTVPSS AAPHPTIPIV SSQGIATPTL  300
NNLTLPSSFP PTNPIVLPPP PQPPPPQPTT TNPTSNLSHH HQQQHTAFPT SFPTIPTDLL  360
SNSTSSSTSS DEELEGRAKK KRKWKDFFER LMKDVIQKQE DLQKRFLETI EKREQERIVR  420
EEAWRMQEMA RINREREILA QERSIKAAKD AAVMSFLQKV SEQQQNQNQN QNQSTPNQSQ  480
LLPLQPAPLP LAPRQPAPPP QPQPQQKVTN FDIVPKSNNN GENDNLMMPP SSSRWPKVEV  540
QALIKLRTSL DSKYQENGPK GPLWEEISGG MRKLGYNRNA KRCKEKWENI NKYFKKVKES  600
NKRRPEDSKT CPYFHLLDSL YRERNNFDQN NVNSTSTTNS SSQFKPENSV PLMVRPEQQW  660
PPQPPPLQQQ DHQGLMMGTD HHQNQGEDYH DQQDKENNIG DDDDDEEDEE EEDEEEEDDD  720
DEGDGNYEIV ANKQAPVGAA TAE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.100180.0fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3976460.0JQ397646.1 Malus zumi GTL mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339105.10.0trihelix transcription factor GT-2
SwissprotQ391171e-141TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A498K1G70.0A0A498K1G7_MALDO; Uncharacterized protein
STRINGXP_008339105.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-94Trihelix family protein