PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000462145
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 199aa    MW: 21903.9 Da    PI: 7.9676
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000462145genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.64.5e-30959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien + rqvtf+kRrng+lKKA+ELSvLCdaevaviifs+++klye++s
  MDP0000462145  9 KRIENATSRQVTFTKRRNGLLKKAYELSVLCDAEVAVIIFSQKDKLYEFCS 59
                   79***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.847161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-41160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.01E-33380IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-31323IPR002100Transcription factor, MADS-box
CDDcd002653.16E-44378No hitNo description
PfamPF003192.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.8E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVRGKIEMKR IENATSRQVT FTKRRNGLLK KAYELSVLCD AEVAVIIFSQ KDKLYEFCSS  60
DMQETLTRYH NYAKDEQTNK VEVEQHVQAY VEQIASILVA SGGLVGVCNG AFHQSGAKLL  120
MEHSAQEKRA SASVSYEKAG ASASASVNYW SQSIMSSEVE TELLIGPPIM RAVDRIAVLS  180
NIHQINNNAC QSSLKTIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A7e-23184186MEF2 CHIMERA
6bz1_B7e-23184186MEF2 CHIMERA
6bz1_C7e-23184186MEF2 CHIMERA
6bz1_D7e-23184186MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem (SAM) during the vegetative phase and the floral transition. After floral transition, expressed in apical meristem (AM), inflorescence meristem (IM) and floral primordia. {ECO:0000269|PubMed:21609362}.
UniprotTISSUE SPECIFICITY: Expressed in quiescent center (QC) cells of root tips (PubMed:18162590, PubMed:21689171). Expressed at the base of the petiole of cotyledons and leaves, in flower buds, petals, sepals and abscission zone of flowers and siliques. {ECO:0000269|PubMed:18162590, ECO:0000269|PubMed:21689171}.
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640111e-136KP164011.1 Pyrus pyrifolia clone PpSOC1-2 SOC1-like MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376862.11e-116MADS-box protein AGL42-like isoform X2
SwissprotQ9FIS13e-40AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A498KPV41e-114A0A498KPV4_MALDO; Uncharacterized protein
STRINGXP_009347901.19e-72(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.31e-42AGAMOUS-like 42