PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000466784
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 223aa    MW: 25607.5 Da    PI: 5.7178
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000466784genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-163377147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+ T+eE++ +++++k+lG++ W++Ia +++ gRt++++k++w++ 
    MDP0000466784 33 RGNITQEEEDXIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSI 77
                     7999******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-101339IPR009057Homeodomain-like
SuperFamilySSF466891.59E-191383IPR009057Homeodomain-like
PROSITE profilePS5129425.2552882IPR017930Myb domain
SMARTSM007176.0E-163280IPR001005SANT/Myb domain
PfamPF002497.5E-153377IPR001005SANT/Myb domain
CDDcd001673.21E-113778No hitNo description
Gene3DG3DSA:1.10.10.602.1E-214079IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MFMKYALFGA GLKRCGKSCR LSWLNYLRPD IKRGNITQEE EDXIIRLHKL LGNRWSLIAG  60
RLPGRTDNEI KNYWNSILRK NAQENQSERS RNKRKTTEDL AAEAASSVET DSHFSKEEVR  120
PTNNGIEEKN TEAESDCHNG FLRKTSDSDM PRNFITDLNE GQLSISEFLH TDFTKLCELN  180
MKIVDCMNSC RNGSLMSTPT TEAPLHLEEL LNDWEAYDFY LP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-2048229108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RSRNKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285433e-70FR828543.1 Rosa rugosa mRNA for putative MYB transcription factor (myb10 gene).
GenBankGU9674423e-70GU967442.1 Rosa rugosa putative MYB transcription factor (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008377865.21e-155transcription factor MYB8-like
TrEMBLA0A498J9T81e-154A0A498J9T8_MALDO; Uncharacterized protein
STRINGXP_008357330.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-39MYB family protein