PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000475808
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 403aa    MW: 45629.1 Da    PI: 6.5689
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000475808genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-153779145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+
    MDP0000475808 37 RGNISPEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWN 79
                     7899******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.762131IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.7E-101743IPR009057Homeodomain-like
SuperFamilySSF466894.21E-201787IPR009057Homeodomain-like
PROSITE profilePS5129423.9773286IPR017930Myb domain
SMARTSM007177.6E-153684IPR001005SANT/Myb domain
PfamPF002495.4E-143779IPR001005SANT/Myb domain
CDDcd001678.89E-114179No hitNo description
Gene3DG3DSA:1.10.10.603.8E-204481IPR009057Homeodomain-like
PROSITE profilePS5122830.143285400IPR000582Acyl-CoA-binding protein, ACBP
Gene3DG3DSA:1.20.80.101.9E-24285395IPR014352FERM/acyl-CoA-binding protein, 3-helical bundle
SuperFamilySSF470274.88E-21285322IPR000582Acyl-CoA-binding protein, ACBP
PRINTSPR006894.3E-8286301IPR000582Acyl-CoA-binding protein, ACBP
PfamPF008872.5E-7286326IPR000582Acyl-CoA-binding protein, ACBP
PRINTSPR006894.3E-8303321IPR000582Acyl-CoA-binding protein, ACBP
PROSITE patternPS008800303321IPR022408Acyl-CoA-binding protein, ACBP, conserved site
SuperFamilySSF470274.88E-21353395IPR000582Acyl-CoA-binding protein, ACBP
PfamPF008874.1E-12354394IPR000582Acyl-CoA-binding protein, ACBP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000062Molecular Functionfatty-acyl-CoA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEKDNGDMLL KKLVRLNRSG KSCRLRWLNY LKPGVKRGNI SPEEEDLIIR LHKLLGNRWS  60
LIAGRLPGRT DNEIKNFWNI SLSKRIQEER PQRIINNKQA PNAGDNHHQG GNYCSNPSKD  120
EDDQSNPVKS NPVPLSDISD DRDQNSSLSF LRDFDSYIHG LSHEAEINGF ENYVVDDSNF  180
VGHGNGTKCE DLVLREDAEA AKWKILGATS DHLIFQPNHE DVDLHAISAF LNSQDGYHQW  240
KFFVSLVHAL HHQLEEDPKI ITTISLLILI AANNLALHTT MALQLEEEFK EYAEKAKSLP  300
PRTTDADKLI LYGLYKQATV GSVNTRDGQW LCGRITAVNL SITVYAHTRI TVYPLDRPGF  360
FSPTERAKWD AWKAVDGKSK EEAMTEYIVK VKQLQXQEVA ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5h3g_A4e-28282393384Putative Acyl-CoA binding protein (ACBP)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028944735.11e-158transcription factor WER-like
TrEMBLA0A498KFH01e-164A0A498KFH0_MALDO; Uncharacterized protein
STRINGXP_009361730.11e-156(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1785547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.17e-36MYB family protein