PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000478453
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 152aa    MW: 17832.6 Da    PI: 9.91
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000478453genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-099411547
                     HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +++ +G g W+ ++++ g++R++k+c++rw++y
    MDP0000478453  9 CIETHGEGKWHQVPSKTGLNRCRKSCRLRWLNY 41
                     6899****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.3144IPR001005SANT/Myb domain
PROSITE profilePS512947.46142IPR017930Myb domain
PfamPF002491.0E-7841IPR001005SANT/Myb domain
SuperFamilySSF466899.98E-15882IPR009057Homeodomain-like
CDDcd001673.80E-4841No hitNo description
Gene3DG3DSA:1.10.10.606.0E-14849IPR009057Homeodomain-like
PROSITE profilePS5129416.164390IPR017930Myb domain
SMARTSM007170.0014788IPR001005SANT/Myb domain
PfamPF002491.6E-54885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-115088IPR009057Homeodomain-like
CDDcd001671.19E-45384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MKMIFSWQCI ETHGEGKWHQ VPSKTGLNRC RKSCRLRWLN YQKPNIKRGD FMEDEVDLII  60
RLHKLLGNRL PGRTANDVKN YWNTQLRTDS CLKMVKNESQ EPRKTVVIRP QPRSFTKNSY  120
YLSNKEPILD HIQSAEDEDI LLKELHVPAL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-12108742125MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7114738e-76JN711473.1 Malus x domestica cultivar Golden Delicious MYB110a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280757.11e-74transcription factor MYB114-like
SwissprotQ9FNV91e-43MY113_ARATH; Transcription factor MYB113
TrEMBLM1VET73e-73M1VET7_MALDO; MYB transcription factor
STRINGXP_009334453.12e-75(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-46myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]