PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000480547

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WRKY

Protein Properties

Length: 256aa MW: 29123.7 Da PI: 8.459

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000480547	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.6	3.4e-30	195	253	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K+vk+s++pr+YY+C+ gC+vkk+ver++edp++v++tY g Hnh+ MDP0000480547 195 LDDGFRWRKYGKKKVKSSPNPRNYYKCSVGGCHVKKRVERDREDPRFVITTYDGVHNHP 253 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.4E-32	181	253	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	188	253	IPR003657	WRKY domain
PROSITE profile	PS50811	30.274	190	255	IPR003657	WRKY domain
SMART	SM00774	9.2E-33	195	254	IPR003657	WRKY domain
Pfam	PF03106	2.3E-23	196	253	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MEEEIAELGL GXGSVNSKEE DVAVTIAGLR EKSRSRRTKH DQEQQDTIKI KNTINGSKKM 60 KRCXEKQEKR IEEETSDWTW SNHEPETFQG TKSTHKSSFG MSVESPETND FSGXLNFEFS 120 EYLMIRKWLD EDPSFVGSEF SVQXSGFRAN EVGESGARSS QPGGSTIRGX XGSSRERQEA 180 RERVAFKTKS EVEILDDGFR WRKYGKKKVK SSPNPRNYYK CSVGGCHVKK RVERDREDPR 240 FVITTYDGVH NHPGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-25	185	252	7	74	Probable WRKY transcription factor 4
2lex_A	4e-25	185	252	7	74	Probable WRKY transcription factor 4
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.25503	1e-168	bud

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028962628.1	1e-106	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	2e-40	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A498JCM7	1e-105	A0A498JCM7_MALDO; Uncharacterized protein
STRING	XP_009334707.1	5e-99	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	3e-41	WRKY DNA-binding protein 50

Link Out ? help Back to Top
Phytozome	MDP0000480547

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821]