PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000485280
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family RAV
Protein Properties Length: 354aa    MW: 40896.1 Da    PI: 6.2545
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000485280genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.25.6e-104794255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   ++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ kl++
  MDP0000485280 47 KFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSEKEAAMAYDSAAVKLRN 94
                   789996.566899****999......44**********99************997 PP
2B393.81.2e-29172267189
                    EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                    f+k+ltpsdv+k++rlv+pkk+a e+        +++ +e+++l+++d+  r+W+++++y+++s+++v+t+GW++Fvk+n+Lk++D+++F+  + s
  MDP0000485280 172 FQKELTPSDVGKLNRLVIPKKYAVEYfpcicenxEENVTEDIELVFYDKLMRVWKFRYCYWRSSQSFVFTRGWNRFVKENNLKANDVITFYACE-S 266
                    99*****************************9997777899**************************************************654.4 PP

                    E CS
             B3  89 e 89 
                    +
  MDP0000485280 267 D 267
                    4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.91E-2146105No hitNo description
PfamPF008477.6E-54794IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-1647103IPR001471AP2/ERF domain
PROSITE profilePS5103216.81847103IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1347104IPR016177DNA-binding domain
SMARTSM003806.4E-1747109IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.7E-32169268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-28171266IPR015300DNA-binding pseudobarrel domain
CDDcd100176.23E-27171262No hitNo description
PROSITE profilePS5086313.62172278IPR003340B3 DNA binding domain
SMARTSM010194.8E-22172274IPR003340B3 DNA binding domain
PfamPF023621.0E-26172267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAEDASIMIS SAQRNVGLET SDSNETDFAL LHQNKRARHD NDXSFAKFKG VVPQQNGHWG  60
AQIYANHQRI WLGTFKSEKE AAMAYDSAAV KLRNGKDLHR NFPWTNFTIQ EPDFQNHYTT  120
EAIIKMIRDG SYPSKFDAFM RSQAQSQIEE MSKGTNPIRV HGDGQVLCRQ LFQKELTPSD  180
VGKLNRLVIP KKYAVEYFPC ICENXEENVT EDIELVFYDK LMRVWKFRYC YWRSSQSFVF  240
TRGWNRFVKE NNLKANDVIT FYACESDGQV IREEDRESTT FWLIDVMHSE GESKRSCFVE  300
EASECKDLQV KLELNLGECS SSKFQKGEGK YSEDHRXSIA EEKGIRLFGV NIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2917126913106DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008338512.20.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6881e-103RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A251NIM80.0A0A251NIM8_PRUPE; Uncharacterized protein
STRINGXP_008338512.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-106RAV family protein