PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000488206
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YB
Protein Properties Length: 105aa    MW: 11785.9 Da    PI: 4.4665
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000488206genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB77.12.6e-2416812791
          NF-YB 27 iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlG.fedyveplkvylkkyr 91
                   ++ d  +tvq cvsefisfvtseasdkcq+ekrktin++dllwa+at      y e+ + yl + +
  MDP0000488206 16 VGTDQSNTVQXCVSEFISFVTSEASDKCQKEKRKTINSNDLLWAMATEAnHAVYFEEDEEYLINIK 81
                   778999***************************************985415668888888887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.4E-211589IPR009072Histone-fold
SuperFamilySSF471131.36E-161791IPR009072Histone-fold
PfamPF008081.5E-132260IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.4E-112442No hitNo description
PROSITE patternPS0068502743IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.4E-114361No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MPCFFYNLPH RSIFSVGTDQ SNTVQXCVSE FISFVTSEAS DKCQKEKRKT INSNDLLWAM  60
ATEANHAVYF EEDEEYLINI KDQADSTSSA MSGWVRAAKD MIVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A4e-1516622874NF-YB
4awl_B4e-1516622975NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A4e-1516622975NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.167924e-55fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. Predominantly expressed in leaves, flowers and siliques. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909552.12e-22nuclear transcription factor Y subunit B isoform X2
SwissprotQ9SLG08e-23NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A411PZE64e-21A0A411PZE6_9ROSI; Nuclear transcription factor Y subunit beta1
TrEMBLA0A446K3Y13e-21A0A446K3Y1_TRITD; Uncharacterized protein
STRINGXP_008389188.15e-39(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.33e-25nuclear factor Y, subunit B1