PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000490521

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

Protein Properties

Length: 169aa MW: 19691.3 Da PI: 7.7154

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000490521	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.1	1.4e-12	54	160	3	95
EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..............-EEEEEE..EEETTEEEE-TTHH.HHHHHHT--TT- CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..............rsWevkliyrkksgryvltkGWk.eFvkangLkegD 78 k l sd ++++rl +pk+ +++h + +k ++ d++ r+ ++k+ +++++ yvl +GW+ eFv gLke+D MDP0000490521 54 KRLAASDLGELSRLLMPKEAVRKHvmsylD-----DKSAKMVDSKEglpvtivdwdtcnrRELTFKH--WNSGDFYVLNGGWRpEFVVRRGLKEND 142 77889*****************765541.....44555555444477777777779889999999..*********879******* PP EEEEEE-SS.SEE..EEE CS B3 79 fvvFkldgr.sefelvvk 95 + ++ld++ ++ ++ ++ MDP0000490521 143 EIGLYLDWDwKTSKYIFR 160 *****99888777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.18E-16	48	165	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.32E-12	50	161	No hit	No description
SMART	SM01019	0.0025	52	162	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.4E-12	53	160	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.1E-9	54	160	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MKLEEEDHHP SNVRLFGVGL GSSLNDPRGG HEPSTDLYLW DPTWDYSSIW KIRKRLAASD 60 LGELSRLLMP KEAVRKHVMS YLDDKSAKMV DSKEGLPVTI VDWDTCNRRE LTFKHWNSGD 120 FYVLNGGWRP EFVVRRGLKE NDEIGLYLDW DWKTSKYIFR FSVLQRAK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008371198.1	1e-121	putative B3 domain-containing protein At1g78640
TrEMBL	A0A498K0T1	1e-120	A0A498K0T1_MALDO; Uncharacterized protein
STRING	XP_008371198.1	1e-120	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF579	12	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	3e-17	B3 family protein

Link Out ? help Back to Top
Phytozome	MDP0000490521