PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000502367
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CPP
Protein Properties Length: 483aa    MW: 52589.1 Da    PI: 8.1993
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000502367genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.63.9e-16160198240
            TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                    ++k+CnCkkskClk+YCeCfaag++C e C+C++C+Nk 
  MDP0000502367 160 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKP 198
                    689**********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-17159200IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163418.822160253IPR005172CRC domain
PfamPF036388.5E-12162197IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVGARRKSLD NVPNSSSSML SQSDEKITTN DKQLVPMKPG GESSRCILPG IGLHLNALAT  60
TSKDYKTIKR ENMAYGRQLS LPNLTAPANS PTAGQGPGHE SFSSASSERD MDGTENGVQL  120
LQDASQEPAF LANEEFNQNS PKKKRHVLPK FEQAGETESS CKRCNCKKSK CLKLYCECFA  180
AGVYCIEPCS CQECFNKPIH EDTVLATRKQ IESRNPLAFA PKVIRNADPV PEYGGGVGCS  240
ISCRCEGCKN TFGRKDETEA DEEEAEACGK SVAENHQQKN EIQENEEQHQ DSALPTTPLR  300
LSRQLVSLPF SSKNKPPRSS VFSIGSSSGL YTSQKLGILC PETKFERHIQ AVPEDEMPEI  360
LQGDGSPSTG IKTASPNGKR VCPPNREFAP SPGRRAGRKL ILQDGSTKGL GRSQDLSYLN  420
KRSVLQLAAC NEEEDSGGEL RRKKTGLLKN WSKTQWTRVV LGPPEARKNG CEDLQGPPKS  480
GK*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175865e-58AC217586.1 Populus trichocarpa clone POP025-M11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008390996.20.0protein tesmin/TSO1-like CXC 2 isoform X2
SwissprotF4JIF59e-86TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A498HL320.0A0A498HL32_MALDO; Uncharacterized protein
STRINGXP_008351261.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.16e-66TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]