PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000502440
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family bHLH
Protein Properties Length: 404aa    MW: 44574.8 Da    PI: 8.4801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000502440genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11225271455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++++k+Lq
  MDP0000502440 225 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKHVKELQ 271
                    699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16225282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-9225271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-11226275No hitNo description
SuperFamilySSF474597.2E-16226282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSSSTPSSTT GVGRQRHXVG IXXDEQERWG QMMSLIEPLX AMSXRLRLRG MDYSFIPQCH  60
LNSLDDGFNA HDIGTALGEN FKQSFSSESY SSYSTLTTKN TPTTTTIASS GGSSINETSH  120
GTSFERPAKL LKTSSWNSII TENVSPKPCS SSSQILSFEN LNSPLPSKPQ KFCNKFEPAL  180
KPKDEXPSQI NMRFSHAQDY EAKGSSQGTK RPCPTSRTPX SHAQDHIMAE RKRREKLSQR  240
FIALSAIVPG LKKMDKASVL GDAIKHVKEL QERVKVLEER SKKRTVESVV FVKKSQLSAD  300
DDTSSCDENF DGCGPDEAAL PEIEARVSEK DVLIRIHCEK QKGVVVKILS EIEKLQLSVV  360
NSSVLPFGAS TLDITIMSQM DDGFNMTVKD LARKLRGALL TFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13225288869Transcription factor MYC2
5gnj_B6e-13225288869Transcription factor MYC2
5gnj_E6e-13225288869Transcription factor MYC2
5gnj_F6e-13225288869Transcription factor MYC2
5gnj_G6e-13225288869Transcription factor MYC2
5gnj_I6e-13225288869Transcription factor MYC2
5gnj_M6e-13225288869Transcription factor MYC2
5gnj_N6e-13225288869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229234ERKRRE
2230235RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008383369.20.0transcription factor bHLH18-like
SwissprotQ9T0722e-71BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A498KNH40.0A0A498KNH4_MALDO; Uncharacterized protein
STRINGXP_008383369.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-73bHLH family protein