PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000515096
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family B3
Protein Properties Length: 292aa    MW: 32488.2 Da    PI: 8.8021
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000515096genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.7e-16801711100
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                    ffk++       s+ l lp kfa +   ++   +k+ +led++g +W+v++  ++ +g+  +++GW+ F+ +n+L++g+ + F ++ +s f   vk
  MDP0000515096  80 FFKIM--IGDQLSKVLFLPPKFAPTVsALV---NKKAVLEDSRGWQWKVTI--SRVDGSLAFQQGWNAFALDNDLQVGELLFFNYVTDSHF--DVK 166
                    66666..334444569*******9996555...458***************..*********************************99999..*** PP

                    EE-SS CS
             B3  96 vfrks 100
                    +++ks
  MDP0000515096 167 ICDKS 171
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-2075173IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.43578171IPR003340B3 DNA binding domain
SuperFamilySSF1019366.28E-2178173IPR015300DNA-binding pseudobarrel domain
CDDcd100174.47E-1579169No hitNo description
PfamPF023621.3E-1380170IPR003340B3 DNA binding domain
SMARTSM010192.9E-980171IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKKPQDFGGQ IIHKPQRKIM GLCQRLDFWG LEAVVRGHGK VFNRAKEVMG SKLEACAECT  60
LKCLQDHGNK KKASPVVASF FKIMIGDQLS KVLFLPPKFA PTVSALVNKK AVLEDSRGWQ  120
WKVTISRVDG SLAFQQGWNA FALDNDLQVG ELLFFNYVTD SHFDVKICDK SGCEKLKFPE  180
AMNQKNWTWD NQNSSVKDGP CHTVDNSLMD KQGSSTSLTS DADEDIGQDL DPMNAKRKAP  240
MVMGNASKCD NSHERSKLKL KEPDRDIGQH LYDMNSKRKA PMVMGNASNC G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117KKPQDFGGQIIHKPQRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017184865.21e-174uncharacterized protein LOC103424706 isoform X3
TrEMBLA0A498JRA61e-172A0A498JRA6_MALDO; Uncharacterized protein
STRINGXP_009333820.11e-160(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-12B3 family protein