PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000517262
Common NameAP2D47, LOC103439589
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 234aa    MW: 26253.3 Da    PI: 6.6353
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000517262genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-18131181255
            AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrdp     k +r++lg+f+t  +Aaka++ a+ kl+g
  MDP0000517262 131 HYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFDTDVDAAKAYDCAAFKLRG 181
                    7********.**********8...4445**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-31130190IPR001471AP2/ERF domain
SMARTSM003807.8E-36131195IPR001471AP2/ERF domain
CDDcd000181.07E-29131189No hitNo description
PfamPF008471.6E-12131181IPR001471AP2/ERF domain
PROSITE profilePS5103224.526131189IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22131190IPR016177DNA-binding domain
PRINTSPR003673.5E-13132143IPR001471AP2/ERF domain
PRINTSPR003673.5E-13171191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAISFPFCSH FDMSAHEEQD DSTLELIRQH LLGDFTFTDS FISHLNFQFQ PVKPEYSSLS  60
ESGPSSPISN PNHHSPQFSN SETKPKIVNL PSMEVEPLNL SSPKRKNSTS QNPGPKDELQ  120
QVSGPGDALR HYRGVRRRPW GKYAAEIRDP ARKGTRVWLG TFDTDVDAAK AYDCAAFKLR  180
GRKAILNFPL EAGVSEPPVN TARKRRRSVK QEEVAETEEL ELQSWVLWEG EGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27130196470ATERF1
3gcc_A2e-27130196470ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206RKRRR
2202207RKRRRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.133440.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324710.0GU732471.1 Malus x domestica AP2 domain class transcription factor (AP2D47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306185.11e-174ethylene-responsive transcription factor ERF106-like
TrEMBLD5L1311e-173D5L131_MALDO; AP2 domain class transcription factor
STRINGXP_008376371.11e-174(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.15e-44ERF family protein
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]