PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000517924

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

WRKY

Protein Properties

Length: 119aa MW: 13750.8 Da PI: 4.9865

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000517924	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	37.6	4.4e-12	23	47	1	25
---SS-EEEEEEE--TT-SS-EEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYY 25 ldDgy+WrKYGqK+vk+s +pr+ + MDP0000517924 23 LDDGYKWRKYGQKVVKNSLHPRAHF 47 59********************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-13	8	47	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-11	15	47	IPR003657	WRKY domain
PROSITE profile	PS50811	13.414	18	47	IPR003657	WRKY domain
SMART	SM00774	1.5E-5	23	55	IPR003657	WRKY domain
Pfam	PF03106	5.3E-8	24	47	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MKVRRKLREP RFCFQTRSDV DVLDDGYKWR KYGQKVVKNS LHPRAHFGDN LVEPSDMLEL 60 NEMIVPAPIV DFEIGEPESY DFCFLQGAAG LIFEGGFEWI FKEPLGLDVK DECFFKGR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1	7	KVRRKLR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.27696	2e-39	bud\| fruit\| leaf\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM622067	4e-40	HM622067.1 Medicago truncatula STP gene, complete cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7294	32	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44745.1	6e-27	WRKY family protein

Link Out ? help Back to Top
Phytozome	MDP0000517924