PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000518032
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 107aa    MW: 11298.8 Da    PI: 7.4206
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000518032genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.22.1e-18950142
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                   k ien+  rqv fsk r g+lKKA+ELS+LCdaeva++ ++s
  MDP0000518032  9 KCIENTASRQVIFSKXRSGLLKKAFELSILCDAEVALVDVAS 50
                   579**********************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554558.5E-19151IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-19159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.923151IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-17323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-161146IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MVRGKTQMKC IENTASRQVI FSKXRSGLLK KAFELSILCD AEVALVDVAS SLEVLFLHPG  60
VVSLTGGDAQ GLVKRDTNHV VGVPQVAELG GLLKEVTDKV SNQSSD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.162572e-57bud| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1675204e-55AM167520.1 Malus x domestica transposon gene for putative DNA topoisomerase II, hypothetical protein, putative CC-NBS-LRR resistance protein, and putative cyclin-related protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280855.12e-19MADS-box protein SOC1-like
TrEMBLA0A498KHX54e-27A0A498KHX5_MALDO; Uncharacterized protein
TrEMBLE4Z8Q93e-25E4Z8Q9_MALDO; Putative COBL7 (COBRA-LIKE 7)
STRINGXP_006413596.18e-20(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.14e-21AGAMOUS-like 19