PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000519909
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Trihelix
Protein Properties Length: 242aa    MW: 27732.4 Da    PI: 8.3593
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000519909genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix29.12.6e-0936105776
       trihelix   7 vlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                     l L++ +  +e +  ++ +  ++W+ +++++   g++r+  q + kw+ l ++yk ik++e k ++ +s
  MDP0000519909  36 ELILVNEVAAVEADCLKALSSFQKWKIIAQNCFTLGVSRTLDQYRRKWDALFGEYKGIKQWEAKCRASDS 105
                    55666666677777777778889****************************************9644433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MKPEQTPSQL DRSHRSSGNR XSTRSQVAPD WNPTDELILV NEVAAVEADC LKALSSFQKW  60
KIIAQNCFTL GVSRTLDQYR RKWDALFGEY KGIKQWEAKC RASDSYWVLG IERRKRNGLP  120
ENFDQELFSG IDKLVRVRGN QSDTDPDSDP EDEAEAEXEE LDSEPESKRR KRRSIPQKSC  180
PKENSFRSCK REKPRETHAQ EKPQETHAEE KPVGSGLKAI PTKSLAEERP QKSCVKEKTY  240
K*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.266060.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008378143.21e-172trihelix transcription factor ASR3-like
TrEMBLA0A498JAN21e-166A0A498JAN2_MALDO; Uncharacterized protein
STRINGXP_008378143.11e-176(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67322633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.19e-42sequence-specific DNA binding transcription factors