PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000523812

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 231aa MW: 25231.7 Da PI: 5.3478

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000523812	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.9	5.7e-16	172	217	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L l+P++ K +Ka++L +A+eY+k+Lq MDP0000523812 172 HNMSEKRRRSRINEKMKALLNLIPNS-----NKTDKASMLDEAIEYLKQLQ 217 ***********************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.85E-19	164	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-18	164	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.13	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-13	172	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.72E-17	172	221	No hit	No description
SMART	SM00353	7.8E-17	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MADLYGSAPD SEEISNIISE LLHGHGSSAS SASSSMPFKP TYMHLLHSSV PLPLQAATQS 60 EFLIPEARHE DHGRFAQLVD RSGXDQRVVG GNSNSAGVLE SSSGFYFSDS GGYFTAEVKE 120 GMGPDGRRIS SENDLGDFSC DSEKGLEEAP DVQLNSAPPR SSSKRSRAAD VHNMSEKRRR 180 SRINEKMKAL LNLIPNSNKT DKASMLDEAI EYLKQLQLQV QVRWFSLFSE *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008367659.1	1e-126	transcription factor SPATULA-like isoform X1
TrEMBL	A0A498JAA8	1e-137	A0A498JAA8_MALDO; Uncharacterized protein
STRING	XP_008347614.1	1e-167	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2276	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	2e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000523812