PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000524885
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WOX
Protein Properties Length: 344aa    MW: 37729.1 Da    PI: 6.5061
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000524885genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.53e-153090257
                   T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   r+R+ +++eq+ +Le+ F++   +p +ee  ++ k l    ++ +++V++WFqNrR + ++
  MDP0000524885 30 RSRWIPKPEQILILESIFNSgMVNPPKEETVRIRKLLekfgSVGDANVFYWFQNRRSRSRR 90
                   89*****************99*************************************997 PP
2Wus_type_Homeobox104.19e-342992265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RW P+peQi iLe++++sG+++P+kee+ ri++ Le++G ++d+NVfyWFQNr++R+r++q
      MDP0000524885 29 VRSRWIPKPEQILILESIFNSGMVNPPKEETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 92
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-8791IPR009057Homeodomain-like
SuperFamilySSF466891.33E-132697IPR009057Homeodomain-like
PROSITE profilePS5007111.1912691IPR001356Homeobox domain
SMARTSM003892.8E-62895IPR001356Homeobox domain
PfamPF000465.1E-133090IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEDHHQHQGQ DPDGSSPSNG STERSPEPVR SRWIPKPEQI LILESIFNSG MVNPPKEETV  60
RIRKLLEKFG SVGDANVFYW FQNRRSRSRR RQRQLQASLE QGTNNNINND PMASLSHHQL  120
RGEIQYGISC SVPATAPPLA FGASPNNFLM GSSSSSSCGH HLITDNDVHH STACVDDQFF  180
PVSGQMGFPE IEQSSGVTSA LGGGPSDTSN LQFQSGLITV FINGFPTEXP KGPLDMKAVF  240
GQDVLLVHSS GLPLPINEFG FLAQSLESGE SYFLPPSSTT RHHFQLPPLP PPSPQPTPHH  300
HQPSXITVVA PHPIFATTTT CETYPKDERR QGRFGXYDPS TYQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391727.20.0WUSCHEL-related homeobox 11-like
SwissprotQ6X7J39e-67WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBLA0A498HZV90.0A0A498HZV9_MALDO; Uncharacterized protein
STRINGXP_008391727.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58983152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-67WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Hu X,Xu L
    Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis.
    Plant Physiol., 2016. 172(4): p. 2363-2373
    [PMID:27784768]
  2. Sheng L, et al.
    Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture.
    Development, 2017. 144(17): p. 3126-3133
    [PMID:28743799]
  3. Liu J, et al.
    The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture.
    Plant Cell Physiol., 2018. 59(4): p. 734-743
    [PMID:29361138]
  4. Baesso B, et al.
    Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana.
    Plant Biol (Stuttg), 2018. 20(3): p. 426-432
    [PMID:29450949]