PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000526584
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family RAV
Protein Properties Length: 438aa    MW: 50349.5 Da    PI: 6.4432
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000526584genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.44.7e-1083130255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++kGV   + +g W A+I+       +  r++lg+f +++eAa a++ a+ kl+g
  MDP0000526584  83 RFKGVVEQP-NGHWGAQIYA------NhERVWLGTFSSENEAAMAYDSAAIKLRG 130
                    799997566.8******999......44*************************97 PP
2B381.77.1e-26210300182
                    EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                    f+k+ltpsdv+k++rlv+p + a+++         ++++ +s +l+++d+  rsW+++++y+k+s+++v+t+GW++Fvk ++Lk++D+++F
  MDP0000526584 210 FQKELTPSDVSKLNRLVIPVTNAKRCfpsisesisQKVESGSSQLVFYDKMMRSWTFRYCYWKSSRSFVFTRGWSRFVKTHHLKAKDILTF 300
                    99******************************99988889999***********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.72E-2382140No hitNo description
SMARTSM003801.8E-2083144IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1583139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-1783138IPR001471AP2/ERF domain
PROSITE profilePS5103217.55683138IPR001471AP2/ERF domain
PfamPF008473.7E-683130IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-29206304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-25208303IPR015300DNA-binding pseudobarrel domain
CDDcd100173.89E-24209300No hitNo description
PfamPF023625.3E-23210300IPR003340B3 DNA binding domain
PROSITE profilePS5086311.505210325IPR003340B3 DNA binding domain
SMARTSM010199.5E-20210311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MREQSVQSIT HVCYTIKKLD GLEERDPEMI PFTGSLSKRS VMEEGMSRTI SNVGVKRDVE  60
EVCDPNLAAN DSSDGASRHV SKRFKGVVEQ PNGHWGAQIY ANHERVWLGT FSSENEAAMA  120
YDSAAIKLRG WECHRNFPWT KVTFEEPHFQ NQYSKEAVLR MIKDXSYQAE FLEYRKSCAA  180
SKSLRSGIQF DSLVRVHSNG NAKMLNRLLF QKELTPSDVS KLNRLVIPVT NAKRCFPSIS  240
ESISQKVESG SSQLVFYDKM MRSWTFRYCY WKSSRSFVFT RGWSRFVKTH HLKAKDILTF  300
FQCHYKQLGD NGNXEPQTFY MVKVNWDGAE SEDDNINCLV ENDANNYQYD KCKLXSVSQN  360
INEAEGIXAD QKKRFRLFGV EICNEEDNVG LGQEEEHGLG LYEAQLLEWK DELATVDPAI  420
TSMRFDRLTS RYTIEDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-222093127101B3 domain-containing transcription factor NGA1
5os9_B2e-222093127101B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.216966e-36bud| leaf| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028951083.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like
TrEMBLA0A498HW870.0A0A498HW87_MALDO; Uncharacterized protein
STRINGXP_008337197.10.0(Malus domestica)
STRINGXP_008367756.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1709048
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.14e-79RAV family protein