PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000527190
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MIKC_MADS
Protein Properties Length: 290aa    MW: 32725.9 Da    PI: 9.1444
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000527190genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.73.6e-241962851
                   HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rqvtfskRr gi+KKAeELS+LC+ ev viifs+tgkl++yss
  MDP0000527190 19 ARQVTFSKRRRGIFKKAEELSILCECEVGVIIFSQTGKLFDYSS 62
                   79****************************************96 PP
2K-box22.54.6e-09921721087
          K-box  10 eeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                    e++++ +l++el+   ++ e+ +   + +R+++GedL++L+l +L++Le+ ++ s+ ++ ++K   l+e  ++l++++ +l
  MDP0000527190  92 EKENTIRLSKELEDKTRKAESTEtglSCKRQMKGEDLQDLDLDQLNKLEKLVQASIGRVIKTKGVELIEANNQLKQRMXML 172
                    55555556666655555555555556778**********************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.399464IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-29463IPR002100Transcription factor, MADS-box
CDDcd002654.66E-32681No hitNo description
SuperFamilySSF554558.63E-27682IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-21626IPR002100Transcription factor, MADS-box
PfamPF003191.3E-211960IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-212641IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-214162IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.05196205IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLKRMKEKIK IRRIDYLPAR QVTFSKRRRG IFKKAEELSI LCECEVGVII FSQTGKLFDY  60
SSSSTKDVIA RYKSHTGGEK SDQXTLHQLQ LEKENTIRLS KELEDKTRKA ESTETGLSCK  120
RQMKGEDLQD LDLDQLNKLE KLVQASIGRV IKTKGVELIE ANNQLKQRMX MLSAGGDIGP  180
AAIMELENLN NVGEEGXTSE SATNVTTCSS SAFSLEDDCS DILSLKLGVV KKPNWFTREY  240
VQRFLIEKAK IIDYNKTVAW KALKRGLPID HPLRRDIITI VGHDFSGLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-16681378MEF2C
5f28_B7e-16681378MEF2C
5f28_C7e-16681378MEF2C
5f28_D7e-16681378MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.146158e-99fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5047171e-158AB504717.1 Pyrus pyrifolia var. culta PpMADS13-2 mRNA for dormancy-associated MADS-box transcription factor, complete cds.
GenBankAB7744751e-158AB774475.1 Pyrus pyrifolia var. culta PpMADS13-2tw mRNA for dormancy-associated MADS-box transcription factor, complete cds, cultivar: TP-85-119.
GenBankKP1640271e-158KP164027.1 Pyrus pyrifolia clone PpDAM1 DAM1-like MADS-box protein mRNA, complete cds.
GenBankKR3493081e-158KR349308.1 Pyrus pyrifolia cultivar mixue dormancy-associated MADS-box transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963037.11e-136MADS-box protein AGL24-like
RefseqXP_028963038.11e-136MADS-box protein AGL24-like
TrEMBLA0A0N9XK011e-132A0A0N9XK01_PYRPY; Dormancy-associated MADS-box transcription factor
STRINGXP_008365219.11e-135(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.18e-32AGAMOUS-like 24