PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000528857

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

NAC

Protein Properties

Length: 275aa MW: 30241.3 Da PI: 5.1678

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000528857	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	32.3	2.8e-10	28	157	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev...diykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 G++F+P+ + l+ +yL +k+ gk+l++ e+ik++ + + +P +p + ++ +e+++ +fF++ ++a + + r +++ ++W+ + + k+ MDP0000528857 28 WGLEFEPKPDSLLIYYLFNKLIGKPLPTVEMIKHLvsgKKNFPDPTFIPpEnfSFGSEKNKAFFFVPFVDEEA--DSSLRfTVRGSFWRFSSE-KS 120 599********************99888888774323334478888754345666777999988765..456664677889996554.44 PP NAM 92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + ++ +g+ +t++f+k+ +++g m ey+l MDP0000528857 121 INHLhngEEVRIGTARTFIFFKNIQEEG---GYEMVEYKL 157 44433346667********8777764...677777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	13.079	26	177	IPR003441	NAC domain
SuperFamily	SSF101941	8.89E-8	27	162	IPR003441	NAC domain
Pfam	PF02365	8.7E-7	29	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAVSSDFNML EKALSVQEFY TAADLEMWGL EFEPKPDSLL IYYLFNKLIG KPLPTVEMIK 60 HLVSGKKNFP DPTFIPPENF SFGSEKNKAF FFVPFVDEEA DSSLRFTVRG SFWRFSSEKS 120 INHLHNGEEV RIGTARTFIF FKNIQEEGGY EMVEYKLLNS KALGIDPRLI XSRSFNDLLQ 180 LYSIVAITCH DGNLEKIKKG IVAPALLTGG GHQIILPPDA DIGAKXSIAP LIDHISXNPD 240 SXAPSPAPQL GLFGLETVSX LARTTGAAGE ASTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008359188.2	0.0	uncharacterized protein LOC103422904
Refseq	XP_028963860.1	0.0	uncharacterized protein LOC103422904
TrEMBL	A0A498J2W9	1e-180	A0A498J2W9_MALDO; Uncharacterized protein
STRING	XP_008359188.1	0.0	(Malus domestica)

Link Out ? help Back to Top
Phytozome	MDP0000528857