PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000537221
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family FAR1
Protein Properties Length: 1003aa    MW: 112226 Da    PI: 6.6226
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000537221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.85.4e-16211283288
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                    fY+eYA+++GFs ++ +s++sk +g+++ r+fvC +eg ++++ ++              C a+l++++++++kw+ tk+++eH+H+
  MDP0000537221 211 FYDEYARRLGFSSKVGQSSRSKPDGTTIAREFVCGREGLKRRHADS--------------CGAMLRIELKRQDKWVSTKFVKEHSHA 283
                    9**************************************9998777..............**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085234.5E-7841IPR013729Multiprotein bridging factor 1, N-terminal
PfamPF118916.4E-893137IPR021825Protein RETICULATA-related
PfamPF031011.4E-12211283IPR004330FAR1 DNA binding domain
PfamPF105518.2E-30426518IPR018289MULE transposase domain
PROSITE profilePS5096610.93704740IPR007527Zinc finger, SWIM-type
PfamPF044344.7E-10710738IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8715742IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MSGGPITQDW KPVVIRKKAP NVATKKDEKA VNAARRSGPE LSFFGGNGGG GAGVGGNSKG  60
WNQGGDGNSD DSSSSVSGFR VLGMFLNRWI SQVAVDPQFA FKVLMEEVVG VSSCVLSDMV  120
SXPNFGLNEL NFIFSTLELY SLALHSGFRM DVEVIDVEGM VHHGIVDDGD AERSDGGEVN  180
NAENSEAXGE DGISEPYVGM EFTSEEAAKT FYDEYARRLG FSSKVGQSSR SKPDGTTIAR  240
EFVCGREGLK RRHADSCGAM LRIELKRQDK WVSTKFVKEH SHASASPGKM QYLRPRRHFA  300
GAAKNAAETY QGVGIVPSGV MYVSMDGNHG NRATVEKNRV VRNTSSAESN RPVKNAVTVN  360
HALRPSSRRR TLGKDAQNLL EYFKKMQAEN PGFFYAIQLD EDNHMANVFW ADARSRTAYC  420
HFGDFVTLDT TYRVNQYRVP FAPFTGVNHH GQTVLFGCAL LLDESEASFI WLFKTFLTAM  480
NDSPPVSIMT DQDRTIQIAV AQVFPEVRHC ISKWHVLREG QDRLAHVCHA HPNFQLELYN  540
CINLTETVEE FELSWDSIVD KYDLRRNDWL QSLYNARAQW VPVYFRDSFF AAISPNQGYD  600
GSFFEGYVNQ QTTLPLFFRQ YERALDDWFE REIEADFDTI CTTPVLRTPS PMEKQAANLY  660
TRKIFAKFQE ELVETFVYTA NRIEGXGAIS TFRVAKFEDD NKAYIVTFNY PEMRANCSCQ  720
MFEYSGILCR HVLTVFTVTN VLTLPSHYIL KRWTRNAKNG TNPDERSGEL HGQESLTLRY  780
NNLCRXAIKY AEDGATTTET FIAAMTALKE GGKKVSVVKN NVAKVAPPSG QISATGYDDK  840
KNSTSTSDLT PSLWPRHDEV MRRFNLNDAG APAQNVSDLN LPRMAPVSLH RDDGTQENML  900
QDYSRIPSTE SEVKFQLSRV SLEPMLRSMS YISDQLSTPA NKVAVINLKL QDTETTSGES  960
EVKFQVSRDT LGAMLRSMAY IREQLSSAAE IQSESVAKKQ RK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.78261e-125fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008373411.20.0protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A251P1K90.0A0A251P1K9_PRUPE; Uncharacterized protein
STRINGXP_008373411.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]