PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000543585
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 294aa    MW: 32356.4 Da    PI: 6.3877
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000543585genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.4e-095362248
                     T......-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 22 g......tWktIartmgkgRtlkqcksrwqkyl 48
                     +      +W++Ia++++  Rt++++k++w+++l
    MDP0000543585  5 RelwansRWAAIASYLP-QRTDNDIKNYWNTHL 36
                     44555558*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.788140IPR017930Myb domain
SuperFamilySSF466897.57E-81042IPR009057Homeodomain-like
PfamPF002492.1E-71036IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-121142IPR009057Homeodomain-like
CDDcd001677.52E-61235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MYGARELWAN SRWAAIASYL PQRTDNDIKN YWNTHLKKXL KKLQTGLXGH DHHNNQDGFS  60
GHSHDQPNSK GQWERRLQTD IHMAKQALSE ALSIGKPSII STSATTSHDL HLQDLKPSIN  120
IGNYNINDNP STSTRPHQAS TYASNTDXIA KLLENWMKKS PKVSTHQTNS DQTNAVXINS  180
FNNNNKGGTT RGCSMSTSSE GAHSATTTPD QAFDSLISFN SSPSDVSQSM SVDENNANFT  240
ADQTSCLFQD ESKPNLEGQV PLTLLEKWLF DDAAPHAHED LINMSLENGA GLF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.157351e-180bud| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0016700.0KM001670.1 Pyrus x bretschneideri transcription factor MYB31 (MYB31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028948978.10.0myb-related protein 306-like
TrEMBLA0A498I5T20.0A0A498I5T2_MALDO; Uncharacterized protein
STRINGXP_008377802.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-33myb domain protein 94