PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000547266
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GeBP
Protein Properties Length: 461aa    MW: 51226.1 Da    PI: 4.633
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000547266genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57384.21.8e-26226322298
         DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveK....irrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                    + qrlwse+Dei++L+G+i+f++k+g+   +++ +f ef+ k ++++ s++qlveK    irrLKkK +      ++g++ +fsk+h+ k+++l k
  MDP0000547266 226 KGQRLWSEDDEITILKGIIEFESKKGVAGNSNVARFLEFITKDLQVDLSTDQLVEKltdkIRRLKKKHQA----GEDGEDSVFSKPHELKCLDLWK 317
                    569*************************************************987511116777777655....4467****************** PP

         DUF573  94 kiWgs 98 
                    kiWgs
  MDP0000547266 318 KIWGS 322
                    ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF010925.1E-9145IPR001377Ribosomal protein S6e
PfamPF045041.8E-23228321IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MKFNIANPTI RCQKNLEIDD DTKLRELWDK RISQEVNGDA LSNDVRSGRT ELVVAHELAQ  60
YAVRANDFKS GIEEEPSWLS PLTFSFSPMV PKKLVEDPPP AVVEDSDEET VDEEEEEEDD  120
AVEAEVSKAK YVDLNDDELE EEDEEEEGRP SAATESDNNS PSASDFTVKP IVSKPANDAV  180
VPSKKTASAK XAAAPNSGSK RPAETEPNPK NSKKKKVGVD DEELKKGQRL WSEDDEITIL  240
KGIIEFESKK GVAGNSNVAR FLEFITKDLQ VDLSTDQLVE KLTDKIRRLK KKHQAGEDGE  300
DSVFSKPHEL KCLDLWKKIW GSEGNGIDSN AKGGKRKPPR KNNKVNNDMV LALPVSEVTV  360
KKEVQKNVGN GGVKADPDDF WSKYPCLNGS LRTGNCAQSS DLTRLVIEKM PSLIGSSKAK  420
ELEERWRALQ LIEMDLSVKK LDLMQEQTKL VLDLMKSSKD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_BG1e-1314714740S ribosomal protein S6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017179502.20.0STOREKEEPER protein-like, partial
TrEMBLA0A498HB530.0A0A498HB53_MALDO; Uncharacterized protein
STRINGXP_008342106.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139661119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-20DNA-binding storekeeper protein-related transcriptional regulator